$ deepTools2.0/bin/bamPEFragmentSize \
-hist fragmentSize.png \
-T "Fragment size of PE RNA-seq data" \
--maxFragmentLength 1000 \
-b testFiles/RNAseq_sample1.bam testFiles/RNAseq_sample2.bam \
testFiles/RNAseq_sample3.bam testFiles/RNAseq_sample4.bam \
-samplesLabel sample1 sample2 sample3 sample4## Output
BAM file : testFiles/RNAseq_sample1.bam
Sample size: 10815
Fragment lengths:
Min.: 0.0
1st Qu.: 311.0
Mean: 8960.68987517
Median: 331.0
3rd Qu.: 362.0
Max.: 53574842.0
Std: 572421.46625
Read lengths:
Min.: 20.0
1st Qu.: 101.0
Mean: 99.1621821544
Median: 101.0
3rd Qu.: 101.0
Max.: 101.0
Std: 9.16567362755
BAM file : testFiles/RNAseq_sample2.bam
Sample size: 6771
Fragment lengths:
Min.: 43.0
1st Qu.: 148.0
Mean: 176.465071629
Median: 164.0
3rd Qu.: 185.0
Max.: 500.0
Std: 53.733877263
......(output truncated)