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ms4alg hangs after lots of thread-related log output #24
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Can you post the output of If this is >2 I suggest adding the following to you
This will prevent the linear algebra libraries from trying to do multi-threading on their own and instead leave that up to the language you are calling them from. |
Sweet! That worked, though it revealed a new error. I am attaching the output below.
This error only appears when I sort an hour long session (96 channels X 107919471 time points). Sorting only a small subset of that session (96 channels X 18000000 time points) runs successfully with your fix above. |
OK. This one looks like an actual bug -> error when there are no cluster's found on a particular channel. Could you open a new issue with the above content. Thanks! |
My run of the sorting algorithm produces the following output and seems to hang during the re-assigning phase (attaching output file). It will stay at this spot for over 15 minutes, even while running with 60 CPUs and 100GB of RAM (processing a 40GB file). Is it normal for the re-assigning phase to take that long?
Could it be related to all the OpenBLAS outputs I get? How should I interpret the OpenBLAS outputs:
_sort_hang.log
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