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FlimJ run issue #43

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osoyer opened this issue Jul 13, 2021 · 1 comment
Open

FlimJ run issue #43

osoyer opened this issue Jul 13, 2021 · 1 comment

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@osoyer
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osoyer commented Jul 13, 2021

Hello,
I'm having difficulty running FlimJ after installing it. Installation was done by adding (ticking) FLIMJ site in the updater panel. I have the "FLIMJ" option under "Analyse" menu, however when I load a test image (test2.std) and start FLIMJ, I get a "exception" error and the FlimJ panel does not come up (as shown on FlimJ info page). The full exception error is copy-pasted below. Also, just to mention, I load the test image "test2.std" via BioFormats. It shows up as a single channel image.

best
orkun

(Fiji Is Just) ImageJ 2.1.0/1.53c; Java 1.8.0_202 [64-bit]; Mac OS X 10.16; 432MB of 8388MB (5%)

java.lang.NoClassDefFoundError: javafx/embed/swing/JFXPanel
at java.lang.Class.getDeclaredConstructors0(Native Method)
at java.lang.Class.privateGetDeclaredConstructors(Class.java:2671)
at java.lang.Class.getConstructor0(Class.java:3075)
at java.lang.Class.newInstance(Class.java:412)
at org.scijava.plugin.PluginInfo.createInstance(PluginInfo.java:304)
at org.scijava.command.CommandInfo.createInstance(CommandInfo.java:247)
at org.scijava.command.CommandModule.instantiateCommand(CommandModule.java:248)
at org.scijava.command.CommandModule.(CommandModule.java:98)
at org.scijava.command.CommandInfo.createModule(CommandInfo.java:325)
at org.scijava.module.DefaultModuleService.createModule(DefaultModuleService.java:167)
at org.scijava.module.DefaultModuleService.run(DefaultModuleService.java:206)
at org.scijava.module.DefaultModuleService.run(DefaultModuleService.java:197)
at org.scijava.module.DefaultModuleService.run(DefaultModuleService.java:182)
at net.imagej.legacy.LegacyService.runLegacyCompatibleCommand(LegacyService.java:302)
at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:166)
at ij.IJ.runPlugIn(IJ.java)
at ij.Executer.runCommand(Executer.java:150)
at ij.Executer.run(Executer.java:68)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: javafx.embed.swing.JFXPanel
at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 19 more

@paddyroddy
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See this on how to fix it: https://duderstadt-lab.github.io/mars-docs/install/

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