The new Flinders University HPC is called DeepThought. This new HPC comprises of AMD EPYC based hardware and next-generation management software, allowing for a dynamic and agile HPC service.
Attention
This documentation is under active development, meaning that it can change over time as we improve it. Please email deepthought@flinders.edu.au if you require assistance. We also welcome user contributions to this documentation - contact the same email above so we can grant you access.
If you use the HPC to form a part of your research, you should attribute your usage. Flinders has minted a DOI that points to this documentation, specific for the HPC Service. It will also allow for tracking the research outputs that the HPC has contributed to.
The below text citation follows the standard Australian Research Data Commons (ARDC) format for attributing data and software. For more information on this type of attribution, visit the ARDC Data Citation page.
Flinders University (2021). DeepThought (HPC). Retrieved from https://doi.org/10.25957/FLINDERS.HPC.DEEPTHOUGHT
The following files are provided for integration into your reference manager of choice. To save the file, 'Right Click -> Save Link As..'.
By popular demand, the HPC Team has started putting together some 101's for common pain-points that we spend time training people on. You can find them below, and please, let us know if you would like a guide for something!
Scroll down the page 'How-To' Table of Contents, head over to the User Guides Toc.
DeepThought has a time-series based visual statistics dashboard that be viewed via a web-browser while on campus.
The 'Default' and 'Public' URL's are using an Alpha Release feature set, and may not display correctly. In that case, please use the 'Full Version' link, and any display strangeness will be resolved.
The following URLS all link to the dashboard.
The 'Full Version' has the capability to change the time-period viewed, and will be removed when the 'Public' and 'Default' feature set reach maturity.
A screen shot of a small portion of the Dashboard is below.
Access/accessrequest.rst Access/windows.rst Access/unix.rst storage/storageusage.rst dataflow/hpcresearchdataflow.rst FileTransfers/FileTransfersIntro.md LinuxCommands/LinuxIntro.md dataflow/hpcjobdataflow.rst SLURM/SLURMIntro.md ModuleSystem/LMod.md
userguides/userguideoverview.rst
software/softwaresuitesoverview.rst software/ansys.rst software/cststudio.rst software/delft3d.rst software/gromacs.rst software/gaussian16.rst software/jupyter.rst software/lammps.rst software/matlab.rst software/singularity.rst software/vasp.rst software/opendatacube.rst
system/deepthoughspecifications.md
FAQ/faq.rst FAQ/knownissues.rst
policies/fairuse.rst policies/accessandpermissions.rst
We recognise the respect the trademarks of all third-party providers referenced in this documentation. Please see the respective EULAs for software packages used in configuring your own environment based on this knowledgebase.
This documentation is released under the Creative-Commons: Attribution-ShareAlike 4.0 International license.