Requirements

Supported Python versions

The package consists predominantly of code written in Python, and the following versions are supported:

Python 3.6
Python 3.7
Python 3.8
Python 3.9
Python 3.10

Software dependencies

Some of the utilities also use 3rd-party software packages, including:

STAR https://github.com/alexdobin/STAR

Other utilities perform post-processing of output from the following external software packages:

MACS https://github.com/macs3-project/MACS
bowtie2 http://bowtie-bio.sourceforge.net/bowtie2/index.shtml