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Felipe Marques de Almeida edited this page Oct 27, 2020 · 4 revisions

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gff-toolbox is a compendium of useful scripts that enable a quick exploration of GFF files. This python package is intended to be a collaborative project wich means any one is invited to collaborate by flagging issues, suggesting improvements and help on new implementations. For this, we encourage users to read Chase's tutorial on how to fork and collaborate to public repos.

Installation

This package can be used without installation or installed via pip or conda. Remember, when not installing it via conda you must make sure that the dependencies are properly installed.

Test cases

We provide in the help message a few examples on how to executed the commands. Additionally, so that users can better understand the results of each command, it is provided two datasets to be used as test cases in the test directory. However, we also provide in this wiki an examplification of the commands execution and results.