- Add legacyQLF argument to runEISA (will be passed to edgeR::glmQLFit)
- Add options to collapse introns by gene and restrict introns to feature ranges in getFeatureRanges.
- Initial version
- R implementation of Exon-Intron Split Analysis (EISA, doi: 10.1038/nbt.3269)
- functionality for extracting spliced and unspliced transcript sequences, as well as intron sequences. e.g. for use in RNA velocity analysis