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conf.py
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conf.py
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# -*- coding: utf-8 -*-
#
# Configuration file for the Sphinx documentation builder.
#
# This file does only contain a selection of the most common options. For a
# full list see the documentation:
# http://www.sphinx-doc.org/en/master/config
# -- Path setup --------------------------------------------------------------
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
import os
import sys
import re
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
sys.path.insert(0, os.path.abspath('..'))
from glob import glob
import nbconvert
from importlib import import_module
import yaml
from textwrap import indent
from otter.utils import convert_config_description_dict
# -- Project information -----------------------------------------------------
project = 'Otter-Grader'
copyright = '2019-2021, UC Berkeley Data Science Education Program'
author = 'UC Berkeley Data Science Education Program Infrastructure Team'
# The short X.Y version
version = ''
# The full version, including alpha/beta/rc tags
release = ''
# -- General configuration ---------------------------------------------------
# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'
# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
'sphinx.ext.autodoc',
'sphinx.ext.githubpages',
'sphinx.ext.coverage',
'sphinx.ext.napoleon',
'sphinx_markdown_tables',
'IPython.sphinxext.ipython_console_highlighting',
'IPython.sphinxext.ipython_directive',
'sphinx_click',
]
napoleon_google_docstring = True
napoleon_numpy_docstring = False
apidoc_module_dir = '../otter'
apidoc_output_dir = '.'
apidoc_excluded_paths = []
autosummary_generate = False
# imports for IPython
ipython_execlines = [
"import json",
"import yaml",
"from otter.run.run_autograder.constants import DEFAULT_OPTIONS_WITH_DESCRIPTIONS",
]
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = ['.rst']
# The master toctree document.
master_doc = 'index'
github_doc_root = 'https://github.com/ucbds-infra/otter-grader/tree/master/docs/'
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = 'en'
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This pattern also affects html_static_path and html_extra_path .
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store', 'modules.rst', 'otter*.rst', 'modules.rst']
# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'
# -- Options for HTML output -------------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
#
html_theme = 'sphinx_book_theme'
html_logo = '../logo/otter-logo-smaller.png'
html_theme_options = {
'github_url': 'https://github.com/ucbds-infra/otter-grader',
'repository_url': 'https://github.com/ucbds-infra/otter-grader'
}
# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
html_css_files = ['style.css']
html_favicon = '_static/favicon.ico'
# Custom sidebar templates, must be a dictionary that maps document names
# to template names.
#
# The default sidebars (for documents that don't match any pattern) are
# defined by theme itself. Builtin themes are using these templates by
# default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
# 'searchbox.html']``.
#
# html_sidebars = { '**': ['globaltoc.html', 'relations.html', 'sourcelink.html', 'searchbox.html'] }
# -- Options for HTMLHelp output ---------------------------------------------
# Output file base name for HTML help builder.
htmlhelp_basename = 'otterdoc'
# -- Options for LaTeX output ------------------------------------------------
latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#
# 'papersize': 'letterpaper',
# The font size ('10pt', '11pt' or '12pt').
#
# 'pointsize': '10pt',
# Additional stuff for the LaTeX preamble.
#
# 'preamble': '',
# Latex figure (float) alignment
#
# 'figure_align': 'htbp',
}
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
# author, documentclass [howto, manual, or own class]).
latex_documents = [
(master_doc, 'otterdoc.tex', 'Otter-Grader Documentation',
'UCBDS Infrastructure Team', 'manual'),
]
# -- Options for manual page output ------------------------------------------
# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
(master_doc, 'Otter-Grader', 'Otter-Grader Documentation',
[author], 1)
]
# -- Options for Texinfo output ----------------------------------------------
# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
# dir menu entry, description, category)
texinfo_documents = [
(master_doc, 'Otter-Grader', 'Otter-Grader Documentation',
author, 'Otter-Grader', 'One line description of project.',
'Miscellaneous'),
]
# -- YAML Dictionary Replacement ---------------------------------------------
files_to_replace = [
"workflow/otter_generate/index.rst",
"otter_assign/v0/python_notebook_format.rst",
"otter_assign/v1/notebook_format.rst",
]
def extract_descriptions_as_comments(config):
coms = []
for d in config:
coms.append("# " + d["description"])
default = d.get("default", None)
if isinstance(default, list) and len(default) > 0 and \
all(isinstance(e, dict) for e in default):
coms.extend(extract_descriptions_as_comments(default))
return coms
def add_comments_to_yaml(yaml, comments):
lines = yaml.split("\n")
ret = []
pad_to = max(len(l) for l in lines) + 2
for l, c in zip(lines, comments):
pad = pad_to - len(l)
new_line = l + " " * pad + c
ret.append(new_line)
return "\n".join(ret)
def update_yaml_block(file):
with open(file) as f:
lines = f.readlines()
lines = [l.strip("\n") for l in lines]
s, e = None, None
for i, line in enumerate(lines):
match = re.match(r"\.\. BEGIN YAML TARGET: ([\w.]+)\s*", line)
if match:
obj = match.group(1)
s = i
elif line.rstrip() == ".. END YAML TARGET":
e = i
assert s is not None and e is not None, f"Unable to replace YAML targets in {file}"
assert s < e, f"Unable to replace YAML targets in {file}"
if s + 1 == e:
lines.insert(e, "")
e += 1
module_path, member_name = obj.rsplit('.', 1)
member_data = getattr(import_module(module_path), member_name)
defaults = convert_config_description_dict(member_data, include_required=True)
code = yaml.safe_dump(defaults, indent=2, sort_keys=False)
comments = extract_descriptions_as_comments(member_data)
code = add_comments_to_yaml(code, comments)
to_replace = "\n.. code-block:: yaml\n\n" + indent(code.rstrip(), " ") + "\n"
lines[s+1:e] = to_replace.split("\n")
with open(file, "w") as f:
f.write("\n".join(lines) + "\n")
for file in files_to_replace:
print(f"Replacing YAML targets in: {file}")
update_yaml_block(file)
# -- Extension configuration -------------------------------------------------
def setup(app):
# run nbconvert on all of the notebooks in _static/notebooks
exporter = nbconvert.HTMLExporter()
print("=" * 15 + " CONVERTING NOTEBOOKS " + "=" * 15)
for file in glob("_static/notebooks/*.ipynb"):
html, _ = exporter.from_filename(file)
with open(os.path.splitext(file)[0] + ".html", "w+") as f:
f.write(html)
print(f"Converted {file} to HTML")
print("=" * len("=" * 15 + " CONVERTING NOTEBOOKS " + "=" * 15))