test_conda_newenv.yml

name: Conda installation

on:
  push:
    branches:
      - main
      - devel
      - binder

jobs:
  miniconda:
    name: Miniconda ${{ matrix.os }}
    runs-on: ${{ matrix.os }}-latest
    continue-on-error: true
    strategy:
      matrix:
        os: ["ubuntu", "macos"]
    defaults:
      run:
        shell: bash -el {0}
    steps:
    - uses: actions/checkout@v3
      with:
        submodules: recursive


    - uses: conda-incubator/setup-miniconda@v2
      with:
        miniforge-variant: Mambaforge
        miniforge-version: latest
        python-version: 3.9.16
        activate-environment: anaconda-client-env
        use-mamba: true
        
    - name: Cache Conda env
      uses: actions/cache@v3
      with:
        path: ${{ env.CONDA }}/envs
        key:
          conda-${{ runner.os }}-${{ runner.arch }}-${{ hashFiles('conda_environment.txt') }}-${{ env.CACHE_NUMBER }}
      env:
        # Increase this value to reset cache if etc/example-environment.yml has not changed
        CACHE_NUMBER: 0
      id: cache

    - name: Update environment
      run: mamba install -n anaconda-client-env --file conda_environment.txt
      if: steps.cache.outputs.cache-hit != 'true'

    - name: Install libexpact in MAC
      run: |
        mamba install -n base libexpat
        mamba install -n anaconda-client-env libexpat
      if: runner.os == 'macOS'
      # alternatively, install libexpat with conda instead of mamba, or install it in base env last

    - name: Install AlloViz
      run: pip install .

    - name: Test with pytest
      run: |
        conda install pytest -y
        pytest test/test_submodules.py
    - name: Test pipeline
      run: pytest test/test_pipeline.py
      timeout-minutes: 2
      continue-on-error: true
    - name: Test downloads
      run: pytest test/test_downloads.py
      timeout-minutes: 2
      continue-on-error: true