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To speed up taxonomic assignment, the STAMPA pipeline described on that repository splits the input dataset in small chunks and spread the computation load using the LSF scheduler (with the bsub command). If you don't have access to a cluster of computers with LSF installed, you can run the analysis linearly (i.e. multithreaded, not parallelized), using the commands below:
To speed up taxonomic assignment, the STAMPA pipeline described on that repository splits the input dataset in small chunks and spread the computation load using the LSF scheduler (with the
bsub
command). If you don't have access to a cluster of computers with LSF installed, you can run the analysis linearly (i.e. multithreaded, not parallelized), using the commands below:The text was updated successfully, but these errors were encountered: