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CHANGELOG.md

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#Releases

v3.0.5

  • Included pyascore functionality.
  • Fixed a bug related to Comet when --accounts_mods T

v3.0.4

  • Fixed minor issue regarding printing auxilary list of additional PSMs when there are no open-groups

v3.0.3

  • Added a column that indicates whether the additionally reported PSMs exceed their corresponding group threshold.

v3.0.2

  • Fixed a small bug related to printing when no discoveries are made.

v3.0.1

  • Reverted dynamic level competition so that it is done on stem sequence.
  • Added reporting feature of delta masses and variable mods of discovered peptides.

v2.1.5

  • Further bug fixes relating to MSFragger search files.

v2.1.4

  • Fixed up bugs relating to MSFragger search files.

v2.1.1

  • Added option to get q-vals.

v2.1.0

  • Corrected the dynamic level competition so that it clusters based on the neutral mass instead of charged mass.

v2.0.0

  • Fixed seed
  • Simplified the CONGA tool so that the narrow variant of the PSM would be used prior to filtering instead of considering the open PSM
  • Protein is now reported
  • Most importantly, updated the dynamic level competition in order to consider delta masses.
  • Prints version when python3 -m CONGA is called

v1.0.1

The code for v1.0.1 was not properly commited so 1.0.1 was created.

v1.0.0

Looks good for production. Fixed a bug relating to cases when no discoveries are found.

v0.0.2

This is the initial release on PYPI

v0.0.1

This is the initial release