This is the place where I store my (public) science work. Most recent work is at the top. This list displayed in this README is incomplete.
Talk about ggplot2.
- Moved to my PresentationsAboutR GitHub
- View this talk: YouTube
Unexpected behavior of sampling youngest and oldest and my proposal to get a consistent branch length distribution.
Presented the state of my DAISIE project
Update about raket.
Update about raket.
Update about raket.
PhD projects overview
Update about raket.
Update about raket.
Showcase some GitHub use from students in the Community Ecology Research course of 2016.
TODO
I gave a TRES presentation on November 23rd 2015, you can view it here.
We, as TECE, discussed the article Phylogenetic diversity–ecosystem function relationships are insensitive to phylogenetic edge lengths by Marc W. Cadotte. Presentation here.
I created a BEAST2 tutorial to add a tree prior here . I also notified the original BEAST2 authors to let them use it as well.
Reminder to self: Statistical Retrinking by Richard McElreath appears to become an awesome statistics book!
Luke Harmon sent me his excellent presentation he gave at a minisymposium for the thesis defence of Thijs Janzen. You can get the PDF here.
I replicated the likelihood calculations by Nee at al. (1994) in R and created a nice PDF to accompany it.
Worked on coalescent theory and nicely document.
Thanks Wikipedia for this list of mathematical operators!
I worked hard to replicate the likelihood calculations by Nee at al. (1994) and put my calculations in the folder NeeEtAl1994. I ended up using the likelihood functions of the DDD (Etienne & Haegeman) and LASER (Rabosky & Schliep) packages. Unsurprisingly, they give the same results (note that DDD uses a proxy for the likelihood, instead of the true likelihood). The expoTree package, however, I could not put it to good use.
- Nee, Sean, Robert M. May, and Paul H. Harvey. "The reconstructed evolutionary process." Philosophical Transactions of the Royal Society B: Biological Sciences 344.1309 (1994): 305-311.
Freek de Haas allowed me to put his, IMHO, excellent presentation online. It is here (.ODP).
I'd love to have a section called 'Biology' here
