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taxator: read FASTA as stream #3

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fungs opened this issue Mar 3, 2015 · 4 comments
Open

taxator: read FASTA as stream #3

fungs opened this issue Mar 3, 2015 · 4 comments
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@fungs
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fungs commented Mar 3, 2015

We currently use SeqAn loading function, maybe this is better in SeqAn 2.0. When using the in-memory sequence store, the data should be read as a stream to support reading the output of decompression programs or on-the-fly conversion from FASTQ etc.
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fungs commented Apr 28, 2015

Do after #1

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fungs commented Apr 28, 2015

Related to #18 (file I/O).

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fungs commented Apr 28, 2015

This is only applicable to the InMemorySeqStore class.

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fungs commented Apr 28, 2015

Before #19

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