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taxator/binner: throw exception when taxid is not found in taxonomy #4

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fungs opened this issue Mar 3, 2015 · 2 comments
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taxator/binner: throw exception when taxid is not found in taxonomy #4

fungs opened this issue Mar 3, 2015 · 2 comments
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enhancement high priority
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1.3 final

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@fungs
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fungs commented Mar 3, 2015

The default should be to exit with a meaningful message and to force the user to provide correct input.
There should be an advanced command line parameter which would allow the user to ignore data with an invalid taxid mapping.
@fungs fungs changed the title taxator: through exception when taxid is not found in taxonomy taxator/binner: throw exception when taxid is not found in taxonomy Mar 3, 2015
@fungs fungs added this to the 1.3 final milestone Mar 6, 2015
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fungs commented Mar 13, 2015

Dependent on exception handling #20 and port to c++11 #12.

@fungs fungs mentioned this issue Mar 13, 2015
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fungs commented Mar 18, 2015

Done, will be merged into master soon.

@fungs fungs closed this as completed Mar 18, 2015
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