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DESCRIPTION
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DESCRIPTION
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Package: gautils
Type: Package
Title: An R package for quick microbiome data wrangle and visualization
Version: 0.1.0
Author: Giacomo Antonello
Maintainer: Giacomo Antonello <giacomo.antonello@eurac.edu>
Description: This package is a collection of function I found useful along my PhD. It makes some plots quick (microbiome scatterplots, boxplots, beta diversity MDS (eg: PCoA), and so on. Aside from these, there are some packages to extract information from some differential abundance tools, in particular "DESeq2" and "corncob", which are slightly "mechanic".
Depends: tidyverse (>= 1.3.2), phyloseq (>= 1.4.2), microbiome(>= 1.20), speedyseq (>= 0.5.3.90)
Imports: phyloseq, speedyseq, microbiome, kableExtra, purrr, RNOmni, biomformat, doParallel, parallelDist, pheatmap, tidyverse, magrittr, DESeq2, dplyr, readr, stringr, tidyr
License: MIT
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Suggests:
testthat (>= 3.0.0)
Config/testthat/edition: 3