CreateOmics with class OmicsSurv

[torongs82]

I runned this code:

data("kirpPheno_df")
data("kirpRNAseq_df")

kidney_Omics <- CreateOmics(
    assayData_df = kirpRNAseq_df,
    pathwayCollection_ls = wikipathways_PC,
    # Exclude the gender indicator for now
    response = kirpPheno_df[, 1:3],
    respType = "surv",
    minPathSize = 5
)

that produced this error:

Creating object of class OmicsSurv =======
Error in validObject(.Object) :
invalid class “OmicsSurv” object: 1: invalid object for slot "assayData_df" in class "OmicsSurv": got class "spec_tbl_df", should be or extend class "data.frame"
invalid class “OmicsSurv” object: 2: invalid object for slot "assayData_df" in class "OmicsSurv": got class "tbl_df", should be or extend class "data.frame"
invalid class “OmicsSurv” object: 3: invalid object for slot "assayData_df" in class "OmicsSurv": got class "tbl", should be or extend class "data.frame"
invalid class “OmicsSurv” object: 4: invalid object for slot "assayData_df" in class "OmicsSurv": got class "data.frame", should be or extend class "data.frame"

[torongs82]

If I runned

kirpRNAseq_df <- as.data.frame(kirpRNAseq_df)

it worked.