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galaxy deployment's preStop command fails #39

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ilveroluca opened this issue Apr 4, 2019 · 1 comment
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galaxy deployment's preStop command fails #39

ilveroluca opened this issue Apr 4, 2019 · 1 comment

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@ilveroluca
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The preStop hook in the galaxy pod is failing to run, so I'm getting these events when I try to pull it down:

50s         Warning   FailedPreStopHook   Pod                     Exec lifecycle hook ([./run.sh --stop]) for Container "galaxy-stable" in Pod "quiet-parrot-galaxy-stable-687dbbc84d-7v5mj_default(7472cdb1-56dd-11e9-9f14-080027a959c5)" failed - error: command './run.sh --stop' exited with 126: , message: "OCI runtime exec failed: exec failed: container_linux.go:344: starting container process caused \"exec: \\\"./run.sh\\\": stat ./run.sh: no such file or directory\": unknown\r\n"

I think the path to run.sh specified in the lifecycle.preStop.exec.command should be relative to the export directory (which is specified as the workingDir), so "./galaxy-central/run.sh".

nuwang referenced this issue in almahmoud/galaxy-helm Jun 11, 2019
@nuwang
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nuwang commented Dec 18, 2019

Should be fixed in latest.

@nuwang nuwang closed this as completed Dec 18, 2019
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