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conda_env.rst

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conda_env command

This section is auto-generated from the help text for the planemo command conda_env. This help message can be generated with planemo conda_env --help.

Usage:

planemo conda_env [OPTIONS] TOOL_PATH

Help

Activate a conda environment for tool.

Source the output of this command to activate a conda environment for this tool.

$ . <(planemo conda_env seqtk_seq.xml)
Deactivate environment with conda_env_deactivate
(seqtk_seq_v6) $ which seqtk
/home/planemo/miniconda2/envs/jobdepsDkzcjjfecc6d406196737781ff4456ec60975c137e04884e4f4b05dc68192f7cec4656/bin/seqtk
(seqtk_seq_v6) $ conda_env_deactivate
$

Options:

--conda_prefix DIRECTORY        Conda prefix to use for conda dependency
                                commands.
--conda_exec FILE               Location of conda executable.
--conda_debug                   Enable more verbose conda logging.
--conda_channels, --conda_ensure_channels TEXT
                                Ensure conda is configured with specified
                                comma separated list of channels.
--conda_use_local               Use locally built packages while building
                                Conda environments.
--help                          Show this message and exit.