This section is auto-generated from the help text for the planemo command
shed_upload. This help message can be generated with planemo shed_upload
--help.
Usage:
planemo shed_upload [OPTIONS] PROJECT
Help
Low-level command to upload tarballs.
Generally, shed_update should be used instead since it also updates
both tool shed contents (via tar ball generation and upload) as well as
metadata (to handle metadata changes in .shed.yml files).
% planemo shed_upload --tar_only ~/ % tar -tzf shed_upload.tar.gz test-data/blastdb.loc ... tools/ncbi_blast_plus/tool_dependencies.xml % tar -tzf shed_upload.tar.gz | wc -l 117
Options:
-r, --recursive Recursively perform command for nested repository
directories.
--fail_fast If multiple repositories are specified and an
error occurs stop immediately instead of
processing remaining repositories.
--owner TEXT Tool Shed repository owner (username).
--name TEXT Tool Shed repository name (defaults to the
inferred tool directory name).
--shed_email TEXT E-mail for Tool Shed auth (required unless
shed_key is specified).
--shed_key TEXT API key for Tool Shed access. An API key is
required unless e-mail and password is specified.
This key can be specified with either --shed_key
or --shed_key_from_env.
--shed_key_from_env TEXT Environment variable to read API key for Tool
Shed access from.
--shed_password TEXT Password for Tool Shed auth (required unless
shed_key is specified).
-t, --shed_target TEXT Tool Shed to target (this can be 'toolshed',
'testtoolshed', 'local' (alias for
http://localhost:9009/), an arbitrary url or
mappings defined ~/.planemo.yml.
-m, --message TEXT Commit message for tool shed upload.
--force_repository_creation If a repository cannot be found for the specified
user/repo name pair, then automatically create
the repository in the toolshed.
--check_diff Skip uploading if the shed_diff detects there
would be no 'difference' (only attributes
populated by the shed would be updated.)
--tar_only Produce tar file for upload but do not publish to
a tool shed.
--tar FILE Specify a pre-existing tar file instead of
automatically building one as part of this
command.
--help Show this message and exit.