Enable repo type update (not supported by TS API yet)

See galaxyproject/galaxy#2781

planemo/shed/__init__.py

@@ -602,10 +602,11 @@ def _build_suite_repo(config, repos, suite_config):


def update_repository_for(ctx, tsi, id, repo_config):
    # TODO: enforce no "type" change.
    from bioblend.galaxy.client import Client
    name = repo_config["name"]
    description = repo_config.get("description", None)
    long_description = repo_config.get("long_description", None)
    repo_type = shed_repo_type(repo_config, name)
    remote_repository_url = repo_config.get("remote_repository_url", None)
    homepage_url = repo_config.get("homepage_url", None)
    categories = repo_config.get("categories", [])
@@ -614,8 +615,9 @@ def update_repository_for(ctx, tsi, id, repo_config):
    _ensure_shed_description(description)

    kwds = dict(
        name=repo_config["name"],
        name=name,
        synopsis=description,
        type=repo_type,
    )
    if long_description is not None:
        kwds["description"] = long_description
@@ -722,12 +724,13 @@ def path_to_repo_name(path):

def shed_repo_type(config, name):
    repo_type = config.get("type", None)
    if repo_type is None and name.startswith("package_"):
        repo_type = REPO_TYPE_TOOL_DEP
    elif repo_type is None and name.startswith("suite_"):
        repo_type = REPO_TYPE_SUITE
    elif repo_type is None:
        repo_type = REPO_TYPE_UNRESTRICTED
    if repo_type is None:
        if name.startswith("package_"):
            repo_type = REPO_TYPE_TOOL_DEP
        elif name.startswith("suite_"):
            repo_type = REPO_TYPE_SUITE
        else:
            repo_type = REPO_TYPE_UNRESTRICTED
    return repo_type