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recursive shed_diff folder naming #192

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martenson opened this Issue May 8, 2015 · 2 comments

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martenson commented May 8, 2015

the planemo shed_diff works fine (empty diff) but when using the -r switch I get this:

diff: _toolshed_: No such file or directory

the whole output:

wget -q --recursive -O - 'https://toolshed.g2.bx.psu.edu/repository/download?repository_id=c5e4f5d8d8629b79&changeset_revision=default&file_type=gz' | tar -xzf - -C /var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tool_shed_diff_F4KkPd/_toolshed__samtools_stats --strip-components 1
mkdir "/var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tool_shed_diff_F4KkPd/_local_"; tar -xzf "/var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmpvbXnTQ" -C "/var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tool_shed_diff_F4KkPd/_local_"; rm -rf /var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tmpvbXnTQ
cd "/var/folders/2z/ntdb9g2n7tq6_bcq4dj9hj9r0000gn/T/tool_shed_diff_F4KkPd"; diff -r _local_ _toolshed_
diff: _toolshed_: No such file or directory

Is the problem that it creates folder named _toolshed__samtools_stats and then tries to diff with _toolshed_ ?

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jmchilton commented May 8, 2015

That does appear to be the problem - thanks for the report. I'll see what I can do.

@jmchilton jmchilton added the bug label May 8, 2015

@jmchilton jmchilton closed this in 3ee3ae8 May 8, 2015

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martenson commented May 8, 2015

Thank you very much.

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