This workflow supplements the Galaxy-P tutorial on database handling (Link). You will find two versions of the same workflow: one creates a database with only the cRAP proteins added, the other further adds the proteomes of the most common mycoplasma contaminants.
An overview of the workflow is given below:
For this workflow, you need no prior inputs. You can change the database to download after starting to run the workflow (default: Homo sapiens). To do so, click on the Taxonomy
option in 1: Protein Database Downloader
.
You may also change other options about the database to download (reviewed
, Proteome Set
and Include isoform data
). Please refer to the database handling tutorial for details.
The workflow provides two outputs:
- The database with cRAP (and mycoplasma) added, and
- The same database with a decoy database with reverse protein sequences attached.