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shed_tool_data_table_conf.xml
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shed_tool_data_table_conf.xml
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<?xml version="1.0"?>
<tables>
<table comment_char="#" name="gatk_picard_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/count_covariates/14e304b70425/gatk_sorted_picard_index.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>count_covariates</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>14e304b70425</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="gatk_picard_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/count_covariates/14e304b70425/gatk_sorted_picard_index.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>count_covariates</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>14e304b70425</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="gatk_picard_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/table_recalibration/30e1dd77e99c/gatk_sorted_picard_index.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>table_recalibration</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>30e1dd77e99c</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="sam_fa_indexes">
<columns>line_type, value, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/freebayes/443ccd9208a0/sam_fa_indices.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>freebayes</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>443ccd9208a0</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="sam_fa_indexes">
<columns>line_type, value, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/bamleftalign/e65540a91b87/sam_fa_indices.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>bamleftalign</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>e65540a91b87</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="sam_fa_indexes">
<columns>line_type, value, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/13d534f2bcde/sam_fa_indices.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>naive_variant_caller</repository_name>
<repository_owner>blankenberg</repository_owner>
<installed_changeset_revision>13d534f2bcde</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="sam_fa_indexes">
<columns>line_type, value, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/13d534f2bcde/sam_fa_indices.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>naive_variant_caller</repository_name>
<repository_owner>blankenberg</repository_owner>
<installed_changeset_revision>13d534f2bcde</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="sam_fa_indexes">
<columns>line_type, value, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/13d534f2bcde/sam_fa_indices.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>naive_variant_caller</repository_name>
<repository_owner>blankenberg</repository_owner>
<installed_changeset_revision>13d534f2bcde</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="sam_fa_indexes">
<columns>line_type, value, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/13d534f2bcde/sam_fa_indices.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>naive_variant_caller</repository_name>
<repository_owner>blankenberg</repository_owner>
<installed_changeset_revision>13d534f2bcde</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="picard_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/picard/379fdf4c41ac/picard_index.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>picard</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>379fdf4c41ac</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="bwa_mem_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/bwa/c71dd035971e/bwa_mem_index.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>bwa</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>c71dd035971e</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="bowtie2_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/c1ec08cb34f9/bowtie2_indices.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>bowtie2</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>c1ec08cb34f9</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="sam_fa_indexes">
<columns>line_type, value, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/bamtools/76b2f1eee508/sam_fa_indices.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>bamtools</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>76b2f1eee508</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="fasta_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/freebayes/4c80a1387285/fasta_indexes.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>freebayes</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>4c80a1387285</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="fasta_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/freebayes/55c06df02168/fasta_indexes.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>freebayes</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>55c06df02168</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="bowtie2_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/ceb6467e276c/bowtie2_indices.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>bowtie2</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>ceb6467e276c</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="tophat2_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/tophat2/81f97e12e573/bowtie2_indices.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>tophat2</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>81f97e12e573</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="fasta_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/aa0ef6f0ee89/fasta_indexes.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>samtools_mpileup</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>aa0ef6f0ee89</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="fasta_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/d04d9f1c6791/fasta_indexes.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>sam_to_bam</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>d04d9f1c6791</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="all_fasta">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/data_manager_sam_fasta_index_builder/cf875cbe2df4/all_fasta.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>data_manager_sam_fasta_index_builder</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>cf875cbe2df4</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="fasta_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/data_manager_sam_fasta_index_builder/cf875cbe2df4/fasta_indexes.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>data_manager_sam_fasta_index_builder</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>cf875cbe2df4</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="fasta_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/1ebb4ecdc1ef/fasta_indexes.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>samtools_calmd</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>1ebb4ecdc1ef</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="fasta_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/0d71d9467847/fasta_indexes.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>samtools_stats</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>0d71d9467847</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="fasta_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/cuffquant/5d8b9dcaf17d/fasta_indexes.loc" />
<tool_shed_repository>
<tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
<repository_name>cuffquant</repository_name>
<repository_owner>devteam</repository_owner>
<installed_changeset_revision>5d8b9dcaf17d</installed_changeset_revision>
</tool_shed_repository>
</table>
<table comment_char="#" name="fasta_indexes">
<columns>value, dbkey, name, path</columns>
<file path="/galaxy-repl/main/tool_data/toolshed.g2.bx.psu.edu/repos/devteam/cuffmerge/b6e3849293b1/fasta_indexes.loc" />
<tool_shed_repository>
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