The scglue
package can be installed either via conda:
conda install -c defaults -c pytorch -c bioconda -c conda-forge -c scglue scglue
Or via pip:
pip install scglue
Note
To avoid potential dependency conflicts, installing within a conda environment is recommended.
Some functions in the scglue
package use metacell aggregation via k-Means clustering, which can receive significant speed up with the faiss package.
You may install faiss
following the official guide.
Now you are all set. Proceed to tutorials for how to use the scglue
package.