/
plotting_parameters.R
75 lines (59 loc) · 1.64 KB
/
plotting_parameters.R
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
# originally by Ruben Garrido-Oter
# garridoo@mpipz.mpg.de
pcoa_width <- 7
pcoa_height <- 6
pcoa_size <- 3
pcoa_alpha <- 0.9
segment_alpha <- 0.4
shannon_width <- 4
shannon_height <- pcoa_height
shannon_alpha <- 0.7
boxplot_size <- 1
boxplot_width <- 0.75
boxplot_jitter_size <- 1.5
width_rec_barplot <- 5
height_rec_barplot <- 3
size_rec_barplot <- 0.35
size_cumsum <- 0.75
proteo_color <- "#2e7f59"
actino_color <- "#ffff00"
bacteroidetes_color <- "#0000ff"
firmicutes_color <- "#ff4500"
chlorophyta_color <- "#32a852"
at_color <- "#f8766c"
lj_color <- "#00bfc4"
lj_mutant_color <- "#8aaeb6"
cr_color <- "#32a852"
soil_color <- "#654321"
rhizosphere_color <- c_orange
bacteria_color <- "#4a80ff"
bacteria_ap_color <- "#ff8200"
input_color <- c_black
cr_only_color <- "#16a11d"
cr_only_color <- "#008080"
teal <- "#008080"
grass <- "#536d06"
chlamy_1030_color <- "#3f5e34"
chlamy_0911_color <- "#5422c9"
chlamy_0968_color <- "#1c7980"
spirogloea_color <- "#eb8f34"
microthamnion_color <- "#c9c547"
klebsormidium_1121_color <- "#3d54a6"
input_shape <- 16
root_shape <- 19
rhizosphere_shape <- 3
soil_shape <- 18
soil_surface_shape <- 25
phycosphere_shape <- 17
aquatic_shape <- 16
covered_color <- "black"
uncovered_color <- "#fcba03"
# ggplot2 theme
main_theme <- theme(panel.background=element_blank(),
panel.grid=element_blank(),
axis.line=element_line(color="black", size=1),
axis.ticks=element_line(color="black", size=1),
legend.background=element_blank(),
legend.key=element_blank(),
text=element_text(size=18, color="black"),
legend.position="none")