Skip to content
This repository has been archived by the owner on Jul 10, 2018. It is now read-only.

Latest commit

 

History

History
17 lines (14 loc) · 2.76 KB

journal.pone.0094199.md

File metadata and controls

17 lines (14 loc) · 2.76 KB

Phylogenies and phyloreferences from Crowl et al., 2014

This test suite includes phylogenies from Crowl et al., 2014. This table summarizes the phylogenies and phyloreferences currently built.

Plastid ML tree PPR ML tree Plastid + PPR ML tree
Tree image URL URL URL
Nexus file URL URL URL
Clade C1 :has_Descendant value :Campanula_latifolia and :excludes_lineage_to value :Trachelium_caeruleum Missing Campanula latifolia :has_Descendant value :Campanula_latifolia and :excudes_lineage_to value :Trachelium_caeruleum
Clade D :has_Descendant value :Wahlenbergia_angustifolia and :excludes_lineage_to value :Heterochaenia_ensifolia Missing Wahlenbergia angustifolia and Heterochaenia ensifolia :has_Descendant value :Wahlenbergia_angustifolia and :excludes_lineage_to value :Heterochaenia_ensifolia
Clade G :has_Descendant value :Campanula_erinus and :excludes_lineage_to value :Campanula_drabifolia :has_Child some (:excludes_lineage_of value :Campanula_drabifolia) and :has_Child value :Campanula_erinus_AC107 :has_Descendant value :Campanula_erinus and :excludes_lineage_to value :Campanula_drabifolia
Clade H Existing phyloreference doesn't resolve, need to use the same trick as clade G. Contains both species, but Campanula pelviformis has shifted enough that this clade now incorporates almost the entire tree. :has_Child some (:has_Descendant value :Campanula_laciniata and :excludes_lineage_to value :Campanula_pelviformis) and :has_Child some (:has_Descendant value :Campanula_pelviformis and :excludes_lineage_to value :Campanula_laciniata)
Clade H by branch Existing phyloreference doesn't resolve, need to use the same trick as clade G. Contains both species, but Campanula pelviformis has shifted enough that this clade now incorporates almost the entire tree. :has_Descendant value :Campanula_laciniata and :excludes_lineage_to value :Campanula_pelviformis