searching against PLSDB as an additional option in plassembler

[gaworj]

Hi,

Thanks again for such a great tool! It is great to see new plassembler options.

Can you also add an option to search for user-supplied plasmids against PLDSB?

Bests,
Jan

[gbouras13]

Hi @gaworj ,

Thanks mate - let me know if you have any feedback on the long mode especially.

Do you mean to use mash to query input assemblies against the PLSDB? Like plassembler assembled with no copy number estimation?

Maybe I can just add a --no_copy_numbers flag to plassembler assembled that should hopefully do what you want.

George

[gbouras13]

Hi @gaworj,

I've implemented this with --no_copy_numbers in the subcommand plassembler assembled

George