/
Arcgisbinding with R.ipynb
290 lines (290 loc) · 15.5 KB
/
Arcgisbinding with R.ipynb
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Try loading the arcgisbinding"
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"*** Please call arc.check_product() to define a desktop license.\n"
]
},
{
"data": {
"text/html": [
"<dl>\n",
"\t<dt>$license</dt>\n",
"\t\t<dd>'Advanced'</dd>\n",
"\t<dt>$version</dt>\n",
"\t\t<dd>'12.1.0.10257'</dd>\n",
"\t<dt>$path</dt>\n",
"\t\t<dd>'C:\\\\Program Files\\\\ArcGIS\\\\Pro\\\\'</dd>\n",
"\t<dt>$dll</dt>\n",
"\t\t<dd>'rarcproxy_pro'</dd>\n",
"\t<dt>$app</dt>\n",
"\t\t<dd>'ArcGIS Pro'</dd>\n",
"\t<dt>$pkg_ver</dt>\n",
"\t\t<dd>'1.0.1.208'</dd>\n",
"</dl>\n"
],
"text/latex": [
"\\begin{description}\n",
"\\item[\\$license] 'Advanced'\n",
"\\item[\\$version] '12.1.0.10257'\n",
"\\item[\\$path] 'C:\\textbackslash{}\\textbackslash{}Program Files\\textbackslash{}\\textbackslash{}ArcGIS\\textbackslash{}\\textbackslash{}Pro\\textbackslash{}\\textbackslash{}'\n",
"\\item[\\$dll] 'rarcproxy\\_pro'\n",
"\\item[\\$app] 'ArcGIS Pro'\n",
"\\item[\\$pkg\\_ver] '1.0.1.208'\n",
"\\end{description}\n"
],
"text/markdown": [
"$license\n",
": 'Advanced'\n",
"$version\n",
": '12.1.0.10257'\n",
"$path\n",
": 'C:\\\\Program Files\\\\ArcGIS\\\\Pro\\\\'\n",
"$dll\n",
": 'rarcproxy_pro'\n",
"$app\n",
": 'ArcGIS Pro'\n",
"$pkg_ver\n",
": '1.0.1.208'\n",
"\n",
"\n"
],
"text/plain": [
"product: ArcGIS Pro ( 12.1.0.10257 )\n",
"license: Advanced \n",
"version: 1.0.1.208 "
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"library(arcgisbinding)\n",
"arc.check_product()"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [],
"source": [
"input_data = \"C:/PROJECTS/R_BRIDGE/r-sample-tools-master/Seagrass.gdb/EMUs_Florida_Subset\"\n",
"d <- arc.open(input_data)"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
"d_df_full <- arc.select(d)"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {},
"outputs": [
{
"data": {
"text/html": [
"<table>\n",
"<thead><tr><th scope=col>OBJECTID</th><th scope=col>OBJECTID_1</th><th scope=col>pointid</th><th scope=col>Seagrass</th><th scope=col>temp</th><th scope=col>salinity</th><th scope=col>nitrate</th><th scope=col>silicate_CalcField</th><th scope=col>phosphate_CalcField</th><th scope=col>dissO2_CalcField</th><th scope=col>EBK_nitrate</th><th scope=col>nitrate_CalcField</th></tr></thead>\n",
"<tbody>\n",
"\t<tr><td>1 </td><td>1 </td><td> 197276 </td><td>1 </td><td>23.40199 </td><td>34.96389 </td><td>NA </td><td>4.706984 </td><td>0.1366675</td><td>5.065754 </td><td>0.3170178</td><td>0.3170178</td></tr>\n",
"\t<tr><td>2 </td><td>2 </td><td> 198118 </td><td>1 </td><td>23.45050 </td><td>35.01641 </td><td>NA </td><td>5.031047 </td><td>0.1335468</td><td>5.028101 </td><td>0.3680477</td><td>0.3680477</td></tr>\n",
"\t<tr><td>3 </td><td>3 </td><td> 198960 </td><td>1 </td><td>23.47861 </td><td>35.09651 </td><td>NA </td><td>5.072901 </td><td>0.1326572</td><td>5.017826 </td><td>0.3838250</td><td>0.3838250</td></tr>\n",
"\t<tr><td>4 </td><td>4 </td><td>7555842 </td><td>1 </td><td>23.32539 </td><td>35.08290 </td><td>NA </td><td>4.706984 </td><td>0.1366675</td><td>5.065754 </td><td>0.3170178</td><td>0.3170178</td></tr>\n",
"\t<tr><td>5 </td><td>5 </td><td>7556684 </td><td>1 </td><td>23.35969 </td><td>35.09720 </td><td>NA </td><td>5.031047 </td><td>0.1335468</td><td>5.028101 </td><td>0.3680477</td><td>0.3680477</td></tr>\n",
"\t<tr><td>6 </td><td>6 </td><td>7557525 </td><td>1 </td><td>23.37109 </td><td>35.15391 </td><td>NA </td><td>5.072901 </td><td>0.1326572</td><td>5.017826 </td><td>0.3838250</td><td>0.3838250</td></tr>\n",
"</tbody>\n",
"</table>\n"
],
"text/latex": [
"\\begin{tabular}{r|llllllllllll}\n",
" OBJECTID & OBJECTID\\_1 & pointid & Seagrass & temp & salinity & nitrate & silicate\\_CalcField & phosphate\\_CalcField & dissO2\\_CalcField & EBK\\_nitrate & nitrate\\_CalcField\\\\\n",
"\\hline\n",
"\t 1 & 1 & 197276 & 1 & 23.40199 & 34.96389 & NA & 4.706984 & 0.1366675 & 5.065754 & 0.3170178 & 0.3170178\\\\\n",
"\t 2 & 2 & 198118 & 1 & 23.45050 & 35.01641 & NA & 5.031047 & 0.1335468 & 5.028101 & 0.3680477 & 0.3680477\\\\\n",
"\t 3 & 3 & 198960 & 1 & 23.47861 & 35.09651 & NA & 5.072901 & 0.1326572 & 5.017826 & 0.3838250 & 0.3838250\\\\\n",
"\t 4 & 4 & 7555842 & 1 & 23.32539 & 35.08290 & NA & 4.706984 & 0.1366675 & 5.065754 & 0.3170178 & 0.3170178\\\\\n",
"\t 5 & 5 & 7556684 & 1 & 23.35969 & 35.09720 & NA & 5.031047 & 0.1335468 & 5.028101 & 0.3680477 & 0.3680477\\\\\n",
"\t 6 & 6 & 7557525 & 1 & 23.37109 & 35.15391 & NA & 5.072901 & 0.1326572 & 5.017826 & 0.3838250 & 0.3838250\\\\\n",
"\\end{tabular}\n"
],
"text/markdown": [
"\n",
"OBJECTID | OBJECTID_1 | pointid | Seagrass | temp | salinity | nitrate | silicate_CalcField | phosphate_CalcField | dissO2_CalcField | EBK_nitrate | nitrate_CalcField | \n",
"|---|---|---|---|---|---|\n",
"| 1 | 1 | 197276 | 1 | 23.40199 | 34.96389 | NA | 4.706984 | 0.1366675 | 5.065754 | 0.3170178 | 0.3170178 | \n",
"| 2 | 2 | 198118 | 1 | 23.45050 | 35.01641 | NA | 5.031047 | 0.1335468 | 5.028101 | 0.3680477 | 0.3680477 | \n",
"| 3 | 3 | 198960 | 1 | 23.47861 | 35.09651 | NA | 5.072901 | 0.1326572 | 5.017826 | 0.3838250 | 0.3838250 | \n",
"| 4 | 4 | 7555842 | 1 | 23.32539 | 35.08290 | NA | 4.706984 | 0.1366675 | 5.065754 | 0.3170178 | 0.3170178 | \n",
"| 5 | 5 | 7556684 | 1 | 23.35969 | 35.09720 | NA | 5.031047 | 0.1335468 | 5.028101 | 0.3680477 | 0.3680477 | \n",
"| 6 | 6 | 7557525 | 1 | 23.37109 | 35.15391 | NA | 5.072901 | 0.1326572 | 5.017826 | 0.3838250 | 0.3838250 | \n",
"\n",
"\n"
],
"text/plain": [
" OBJECTID OBJECTID_1 pointid Seagrass temp salinity nitrate\n",
"1 1 1 197276 1 23.40199 34.96389 NA \n",
"2 2 2 198118 1 23.45050 35.01641 NA \n",
"3 3 3 198960 1 23.47861 35.09651 NA \n",
"4 4 4 7555842 1 23.32539 35.08290 NA \n",
"5 5 5 7556684 1 23.35969 35.09720 NA \n",
"6 6 6 7557525 1 23.37109 35.15391 NA \n",
" silicate_CalcField phosphate_CalcField dissO2_CalcField EBK_nitrate\n",
"1 4.706984 0.1366675 5.065754 0.3170178 \n",
"2 5.031047 0.1335468 5.028101 0.3680477 \n",
"3 5.072901 0.1326572 5.017826 0.3838250 \n",
"4 4.706984 0.1366675 5.065754 0.3170178 \n",
"5 5.031047 0.1335468 5.028101 0.3680477 \n",
"6 5.072901 0.1326572 5.017826 0.3838250 \n",
" nitrate_CalcField\n",
"1 0.3170178 \n",
"2 0.3680477 \n",
"3 0.3838250 \n",
"4 0.3170178 \n",
"5 0.3680477 \n",
"6 0.3838250 "
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"head(d_df_full)"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {},
"outputs": [
{
"data": {
"text/html": [
"<table>\n",
"<thead><tr><th></th><th scope=col>OBJECTID</th><th scope=col>OBJECTID_1</th><th scope=col>pointid</th><th scope=col>Seagrass</th><th scope=col>temp</th><th scope=col>salinity</th><th scope=col>nitrate</th><th scope=col>silicate_CalcField</th><th scope=col>phosphate_CalcField</th><th scope=col>dissO2_CalcField</th><th scope=col>EBK_nitrate</th><th scope=col>nitrate_CalcField</th></tr></thead>\n",
"<tbody>\n",
"\t<tr><th scope=row>5567</th><td>5567 </td><td>5569 </td><td>21211016 </td><td>0 </td><td>27.73251 </td><td>36.10109 </td><td> NA </td><td>3.990829 </td><td>0.13862170</td><td>4.493684 </td><td>2.1979926 </td><td>2.1979926 </td></tr>\n",
"\t<tr><th scope=row>5568</th><td>5568 </td><td>5570 </td><td>21211017 </td><td>0 </td><td>26.76391 </td><td>36.30901 </td><td> NA </td><td>1.956519 </td><td>0.05937159</td><td>4.563109 </td><td>0.9446583 </td><td>0.9446583 </td></tr>\n",
"\t<tr><th scope=row>5569</th><td>5569 </td><td>5571 </td><td>21211018 </td><td>0 </td><td>26.83391 </td><td>36.33859 </td><td> NA </td><td>2.048069 </td><td>0.06225080</td><td>4.568600 </td><td>0.9167514 </td><td>0.9167514 </td></tr>\n",
"\t<tr><th scope=row>5570</th><td>5570 </td><td>5572 </td><td>21211019 </td><td>0 </td><td>26.88861 </td><td>36.35799 </td><td> NA </td><td>2.215459 </td><td>0.06767644</td><td>4.583409 </td><td>0.8382264 </td><td>0.8382264 </td></tr>\n",
"\t<tr><th scope=row>5571</th><td>5571 </td><td>5573 </td><td>21211020 </td><td>0 </td><td>26.92181 </td><td>36.37840 </td><td> NA </td><td>2.457869 </td><td>0.07446024</td><td>4.609344 </td><td>0.7220694 </td><td>0.7220694 </td></tr>\n",
"\t<tr><th scope=row>5572</th><td>5572 </td><td>5574 </td><td>21211021 </td><td>0 </td><td>26.94729 </td><td>36.38551 </td><td>0.5180613 </td><td>2.702261 </td><td>0.07475934</td><td>4.654354 </td><td>0.5777277 </td><td>0.5180613 </td></tr>\n",
"</tbody>\n",
"</table>\n"
],
"text/latex": [
"\\begin{tabular}{r|llllllllllll}\n",
" & OBJECTID & OBJECTID\\_1 & pointid & Seagrass & temp & salinity & nitrate & silicate\\_CalcField & phosphate\\_CalcField & dissO2\\_CalcField & EBK\\_nitrate & nitrate\\_CalcField\\\\\n",
"\\hline\n",
"\t5567 & 5567 & 5569 & 21211016 & 0 & 27.73251 & 36.10109 & NA & 3.990829 & 0.13862170 & 4.493684 & 2.1979926 & 2.1979926 \\\\\n",
"\t5568 & 5568 & 5570 & 21211017 & 0 & 26.76391 & 36.30901 & NA & 1.956519 & 0.05937159 & 4.563109 & 0.9446583 & 0.9446583 \\\\\n",
"\t5569 & 5569 & 5571 & 21211018 & 0 & 26.83391 & 36.33859 & NA & 2.048069 & 0.06225080 & 4.568600 & 0.9167514 & 0.9167514 \\\\\n",
"\t5570 & 5570 & 5572 & 21211019 & 0 & 26.88861 & 36.35799 & NA & 2.215459 & 0.06767644 & 4.583409 & 0.8382264 & 0.8382264 \\\\\n",
"\t5571 & 5571 & 5573 & 21211020 & 0 & 26.92181 & 36.37840 & NA & 2.457869 & 0.07446024 & 4.609344 & 0.7220694 & 0.7220694 \\\\\n",
"\t5572 & 5572 & 5574 & 21211021 & 0 & 26.94729 & 36.38551 & 0.5180613 & 2.702261 & 0.07475934 & 4.654354 & 0.5777277 & 0.5180613 \\\\\n",
"\\end{tabular}\n"
],
"text/markdown": [
"\n",
"| <!--/--> | OBJECTID | OBJECTID_1 | pointid | Seagrass | temp | salinity | nitrate | silicate_CalcField | phosphate_CalcField | dissO2_CalcField | EBK_nitrate | nitrate_CalcField | \n",
"|---|---|---|---|---|---|\n",
"| 5567 | 5567 | 5569 | 21211016 | 0 | 27.73251 | 36.10109 | NA | 3.990829 | 0.13862170 | 4.493684 | 2.1979926 | 2.1979926 | \n",
"| 5568 | 5568 | 5570 | 21211017 | 0 | 26.76391 | 36.30901 | NA | 1.956519 | 0.05937159 | 4.563109 | 0.9446583 | 0.9446583 | \n",
"| 5569 | 5569 | 5571 | 21211018 | 0 | 26.83391 | 36.33859 | NA | 2.048069 | 0.06225080 | 4.568600 | 0.9167514 | 0.9167514 | \n",
"| 5570 | 5570 | 5572 | 21211019 | 0 | 26.88861 | 36.35799 | NA | 2.215459 | 0.06767644 | 4.583409 | 0.8382264 | 0.8382264 | \n",
"| 5571 | 5571 | 5573 | 21211020 | 0 | 26.92181 | 36.37840 | NA | 2.457869 | 0.07446024 | 4.609344 | 0.7220694 | 0.7220694 | \n",
"| 5572 | 5572 | 5574 | 21211021 | 0 | 26.94729 | 36.38551 | 0.5180613 | 2.702261 | 0.07475934 | 4.654354 | 0.5777277 | 0.5180613 | \n",
"\n",
"\n"
],
"text/plain": [
" OBJECTID OBJECTID_1 pointid Seagrass temp salinity nitrate \n",
"5567 5567 5569 21211016 0 27.73251 36.10109 NA\n",
"5568 5568 5570 21211017 0 26.76391 36.30901 NA\n",
"5569 5569 5571 21211018 0 26.83391 36.33859 NA\n",
"5570 5570 5572 21211019 0 26.88861 36.35799 NA\n",
"5571 5571 5573 21211020 0 26.92181 36.37840 NA\n",
"5572 5572 5574 21211021 0 26.94729 36.38551 0.5180613\n",
" silicate_CalcField phosphate_CalcField dissO2_CalcField EBK_nitrate\n",
"5567 3.990829 0.13862170 4.493684 2.1979926 \n",
"5568 1.956519 0.05937159 4.563109 0.9446583 \n",
"5569 2.048069 0.06225080 4.568600 0.9167514 \n",
"5570 2.215459 0.06767644 4.583409 0.8382264 \n",
"5571 2.457869 0.07446024 4.609344 0.7220694 \n",
"5572 2.702261 0.07475934 4.654354 0.5777277 \n",
" nitrate_CalcField\n",
"5567 2.1979926 \n",
"5568 0.9446583 \n",
"5569 0.9167514 \n",
"5570 0.8382264 \n",
"5571 0.7220694 \n",
"5572 0.5180613 "
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"tail(d_df_full)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## It Worked!"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"- clone env\n",
"- deactivate env\n",
"- activate cloned env\n",
"- conda install -c r r-essentials\n",
"https://www.datacamp.com/community/blog/jupyter-notebook-r"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "R",
"language": "R",
"name": "ir"
},
"language_info": {
"codemirror_mode": "r",
"file_extension": ".r",
"mimetype": "text/x-r-source",
"name": "R",
"pygments_lexer": "r",
"version": "3.4.2"
}
},
"nbformat": 4,
"nbformat_minor": 2
}