/
at_setParametersTiming.m
executable file
·171 lines (133 loc) · 4 KB
/
at_setParametersTiming.m
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function at_setParametersTiming(all)
global timeLapse datastat at_displayHandles
%'all' : set this argument to apply the parameters to all items in the
%datastat
% default parameters values
tdiv=[15 100];
tg1=[0 100];
ts=[0 100];
tg2=[0 100];
tana=[2 10];
chi=0.01;
if isfield(timeLapse,'autotrack')
if ~isfield(timeLapse.autotrack,'timing')
timeLapse.autotrack.timing=[];
end
if isfield(timeLapse.autotrack.timing,'tdiv')
tdiv=timeLapse.autotrack.timing.tdiv;
tg1=timeLapse.autotrack.timing.tg1;
ts=timeLapse.autotrack.timing.ts;
tg2=timeLapse.autotrack.timing.tg2;
tana=timeLapse.autotrack.timing.tana;
chi=timeLapse.autotrack.timing.chi;
else
timeLapse.autotrack.timing.tdiv=tdiv;
timeLapse.autotrack.timing.tg1=tg1;
timeLapse.autotrack.timing.ts=ts;
timeLapse.autotrack.timing.tg2=tg2;
timeLapse.autotrack.timing.tana=tana;
timeLapse.autotrack.timing.chi=chi;
end
end
if numel(datastat)
for i=1:numel(datastat)
if nargin==0
if datastat(i).selected==0
continue
end
end
if ~isfield(datastat(i),'outlier') | numel(datastat(i).outlier)==0
datastat(i).outlier.tdiv=tdiv;
datastat(i).outlier.tg1=tg1;
datastat(i).outlier.ts=ts;
datastat(i).outlier.tg2=tg2;
datastat(i).outlier.tana=tana;
datastat(i).outlier.chi=chi;
else
tdiv=datastat(i).outlier.tdiv;
tg1=datastat(i).outlier.tg1;
ts=datastat(i).outlier.ts;
tg2=datastat(i).outlier.tg2;
tana=datastat(i).outlier.tana;
chi=datastat(i).outlier.chi;
end
end
end
if usejava('jvm') && ~feature('ShowFigureWindows')
% use text-based alternative (input)
answer{1} = input('Timings : Min/Max Tdiv (frames) ', 's');
answer{2} = input('Timings : Min/Max TG1 (frames) ', 's');
answer{3} = input('Timings : Min/Max TS (frames) ', 's');
answer{4} = input('Timings : Min/Max TG2 (frames) ', 's');
answer{5} = input('Timings : Min/Max Tana (frames)', 's');
answer{6} = input('Timings : Max Chi2', 's');
else
% use GUI dialogs (questdlg)
defaultanswer={num2str(tdiv),num2str(tg1),num2str(ts),num2str(tg2),num2str(tana),num2str(chi)};
prompt={'Min/Max Tdiv (frames)',...
'Min/Max TG1 (frames)',...
'Min/Max TS (frames)',...
'Min/Max TG2 (frames)',...
'Min/Max Tana (frames)',...
'Max Chi2'};
name='Timing Par.';
numlines=1; answer=inputdlg(prompt,name,numlines,defaultanswer);
end
if numel(answer)==0 return; end
if isfield(timeLapse,'autotrack')
timeLapse.autotrack.timing.tdiv=str2num(answer{1});
timeLapse.autotrack.timing.tg1=str2num(answer{2});
timeLapse.autotrack.timing.ts=str2num(answer{3});
timeLapse.autotrack.timing.tg2=str2num(answer{4});
timeLapse.autotrack.timing.tana=str2num(answer{5});
timeLapse.autotrack.timing.chi=str2num(answer{6});
end
if numel(datastat)
for i=1:numel(datastat)
if nargin==0
if datastat(i).selected==0
continue
end
end
datastat(i).outlier.tdiv=str2num(answer{1});
datastat(i).outlier.tg1=str2num(answer{2});
datastat(i).outlier.ts=str2num(answer{3});
datastat(i).outlier.tg2=str2num(answer{4});
datastat(i).outlier.tana=str2num(answer{5});
datastat(i).outlier.chi=str2num(answer{6});
end
end
% adjust outlier based on timing
if numel(datastat)==0
return;
end
for i=1:numel(datastat)
if nargin==0
if datastat(i).selected==0
continue
end
end
stats=datastat(i).stats;
coef=1;
if numel(stats)==0
continue
end
for j=1:size(stats,1)
stats(j,6)=0;
mother=stats(j,5);
a=j;
[out str]=at_checkOutlier(stats,a,mother,datastat(i).outlier);
if out==1
stats(j,6)=1;
end
end
datastat(i).stats=stats;
end
if isfield(at_displayHandles,'figure1')
if ishandle(at_displayHandles.figure1)
at_display
end
end
%if chi2> timeLapse.autotrack.timing.chi out=1; %chi2
%end
%chi2=sum( (y2-y).^2 ) / length(y);