Failing to run Openfold when providing protein sequence (using Docker image)

[mikael-h-christensen]

Hi,

Using an docker image built from the provided Dockerfile in your repo, I get the following error when trying to run the latest DiffDock starting from a protein sequence.

  File "/home/appuser/micromamba/envs/diffdock/lib/python3.9/site-packages/openfold/utils/__init__.py", line 13, in <listcomp>
    _modules = [(m, importlib.import_module("." + m, __name__)) for m in __all__]
  File "/home/appuser/micromamba/envs/diffdock/lib/python3.9/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "/home/appuser/micromamba/envs/diffdock/lib/python3.9/site-packages/openfold/utils/seed.py", line 5, in <module>
    from pytorch_lightning.utilities.seed import seed_everything
ImportError: cannot import name 'seed_everything' from 'pytorch_lightning.utilities.seed' (/home/appuser/micromamba/envs/diffdock/lib/python3.9/site-packages/pytorch_lightning/utilities/seed.py)

The installed pytorch_lightning version in the docker image is 2.2.0.post0, while I think the last version to support 'seed_everything' is 1.9.4 (or 1.9.5)