download and packaged "gcszhn_plugin" as a ZIP file, and install it as pymol plugin.
- copy_selection
Copy selection to clipboard.
- save_by_objects
Save different objects as different files.
- plddt_color
Plot plddt color by residue. The same color as Alphafold DB.
- set_hydro_color_v2
Annotate hydrophobicity color of each residue. this function implmented by pymol.cmd.alter and pymol.cmd.spectrum.
- set_hydro_color_v1
Annotate hydrophobicity color of each residue.
- set_hydration_color
Annotate residue color according to hydration water molecular count.
- get_sasa
Calculate solvent accessible surface area (SASA) for specific selection.
- set_sasa_color
Annotated color by sasa.
- load_dots
Load 3D object (*.ply) as dots.
- load_ply
Load 3D object (*.ply) as mesh.
- load_ply_with_patch
Load 3D object (*.ply) as mesh and annotate specific patch by provided patch list.
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load_giface Load 3D object (*.ply) as giface.
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extract_patch
Extract patch residues from model according to the patch mesh object.