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Error when computing report for Regenie #5

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filosi opened this issue Jul 20, 2023 · 1 comment
Closed

Error when computing report for Regenie #5

filosi opened this issue Jul 20, 2023 · 1 comment

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@filosi
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filosi commented Jul 20, 2023

java.lang.NumberFormatException: For input string: "NA" at java.base/jdk.internal.math.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:2054) at java.base/jdk.internal.math.FloatingDecimal.parseDouble(FloatingDecimal.java:110) at java.base/java.lang.Double.parseDouble(Double.java:651) at genepi.io.table.reader.AbstractTableReader.getDouble(AbstractTableReader.java:38) at genepi.io.table.reader.AbstractTableReader.getDouble(AbstractTableReader.java:30) at genepi.genomic.utils.commands.GwasReportCommand.createHtmlReport(GwasReportCommand.java:316) at genepi.genomic.utils.commands.GwasReportCommand.call(GwasReportCommand.java:216) at genepi.genomic.utils.commands.GwasReportCommand.call(GwasReportCommand.java:31) at picocli.CommandLine.executeUserObject(CommandLine.java:2041) at picocli.CommandLine.access$1500(CommandLine.java:148) at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2461) at picocli.CommandLine$RunLast.handle(CommandLine.java:2453) at picocli.CommandLine$RunLast.handle(CommandLine.java:2415) at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2273) at picocli.CommandLine$RunLast.execute(CommandLine.java:2417) at picocli.CommandLine.execute(CommandLine.java:2170) at genepi.genomic.utils.App.main(App.java:38)

@lukfor
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lukfor commented Jul 30, 2023

Thanks Michele, should be fixed in 2caabd9 and is available with the next release 👍

@lukfor lukfor closed this as completed Jul 30, 2023
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