/
Pan_troglodytes.yaml
81 lines (81 loc) · 1.87 KB
/
Pan_troglodytes.yaml
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---
species:
short_name: mPanTro
name: Pan troglodytes
common_name: chimpanzee
taxon_id: 9598
order:
name: Primates
family:
name: Hominidae
individuals:
-
short_name: mPanTro1
name: Clint
biosample_id: null
strain: null
subspecies: null
alt_ids:
- Clint_PTR
- Clint_PTR_HFSS
- S006007
sex: male
description: >
The 'reference' genome chimp;
Yerkes chimp pedigree #C0471 (Clint);
provider: Evan Eichler (University of Washington), Coriell
father: null
mother: null
-
short_name: mPanTro3
name: null
biosample_id: SAMN30216104
strain: null
subspecies: null
alt_ids:
- AG18354
- AG18354_PTR
- non-Clint
sex: male
description: null
provider: Laura Carrel (The Pennsylvania State University), originally acquired from Coriell
father: null
mother: null
-
short_name: mPanTro4
name: null
biosample_id: null
strain: null
subspecies: null
alt_ids:
- PTR_8720-2
- Ptr 8720-2
- 8720
sex: male
description: null
provider: University of Texas, MD Anderson Cancer Center, Michael E. Keeling Center for Comparative Medicine and Research
father: null
mother: null
samples:
-
sample_id: mPanTro4.testis1
tissue: testis
dev_stage: adult
sample_biosample_id: SAMN31975257
-
short_name: mPanTro5
name: null
biosample_id: SAMN29543730
strain: null
subspecies: null
alt_ids:
- C8861
- C8861_PTR
sex: male
description: null
provider: Yoav Gilad (The University of Chicago)
father: null
mother: null
genome_size: 3613710000
genome_size_method: GoaT Fuelgen Densitometry/Flow Cytometry
project: [ vgp, t2t ]