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54 Open 88 Closed
54 Open 88 Closed
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Issues list

Serve on port 5432 by default bug Something isn't working priority:medium Medium priority
#288 opened Jun 1, 2024 by jsstevenson
Make default UTA DB URL value programmatically accessible enhancement New feature or request priority:low Low priority
#287 opened Jun 1, 2024 by jsstevenson
Provide resource availability check methods enhancement New feature or request priority:low Low priority
#286 opened Jun 1, 2024 by jsstevenson
1
Consider alternatives to custom genomic table priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#285 opened Apr 30, 2024 by korikuzma
Don't download resource files on import enhancement New feature or request priority:medium Medium priority
#284 opened Apr 30, 2024 by jsstevenson
3
Clean up UTA setup instructions documentation Improvements or additions to documentation priority:medium Medium priority
#283 opened Apr 20, 2024 by jsstevenson
Allow initialization of writeable SeqRepo instance enhancement New feature or request priority:low Low priority
#282 opened Apr 8, 2024 by jsstevenson
1
Update SeqRepo collection to 2024-02-20 documentation Improvements or additions to documentation priority:medium Medium priority
#270 opened Feb 21, 2024 by korikuzma
Resolve S608 errors priority:medium Medium priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#269 opened Feb 13, 2024 by korikuzma
polars DeprecationWarning: named columns param is deprecated priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#267 opened Feb 8, 2024 by korikuzma
Fix test_get_prioritized_transcripts_from_gene in test_mane_transcript.py bug Something isn't working test Changes to test code only
#261 opened Jan 30, 2024 by jsstevenson
1
Reduce the number of tests priority:low Low priority test Changes to test code only
#255 opened Jan 10, 2024 by korikuzma
event_loop fixture deprecated priority:medium Medium priority test Changes to test code only
#253 opened Jan 5, 2024 by jsstevenson
1
Remove unused methods/functions priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#246 opened Dec 27, 2023 by korikuzma
@korikuzma
Better naming in UTA database module priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#245 opened Dec 27, 2023 by korikuzma
Revisit PostgreSQL connection code performance Improvements to performance priority:medium Medium priority
#239 opened Dec 27, 2023 by jsstevenson
1
Gene name inputs enhancement New feature or request technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#232 opened Dec 26, 2023 by jsstevenson
Mark MANETranscript._validate_index() as public enhancement New feature or request priority:low Low priority
#229 opened Dec 22, 2023 by jsstevenson
Clean up ExonGenomicCoordsMapper priority:medium Medium priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#224 opened Dec 8, 2023 by korikuzma
@korikuzma
3
MANETranscript method g_to_grch38 should have residue_mode parameter enhancement New feature or request priority:medium Medium priority
#220 opened Nov 12, 2023 by korikuzma
@korikuzma
Return VRS objects where we can priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#219 opened Nov 3, 2023 by korikuzma
Use enum for chromosome parameters enhancement New feature or request priority:low Low priority
#218 opened Nov 3, 2023 by jsstevenson
Consider dropping API endpoints enhancement New feature or request priority:low Low priority
#208 opened Oct 12, 2023 by jsstevenson
1
Lazily acquire data sources performance Improvements to performance priority:medium Medium priority
#204 opened Oct 10, 2023 by jsstevenson
Add basic API endpoint tests priority:low Low priority test Changes to test code only
#198 opened Oct 8, 2023 by korikuzma
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