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Merge branch 'dev' into docs/dev
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lizziel committed Aug 31, 2022
2 parents d08b920 + ec84dd2 commit fd11126
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1 change: 0 additions & 1 deletion .ci-pipelines/MinimumStandaloneTransportTracer
Submodule MinimumStandaloneTransportTracer deleted from cfb7d7
83 changes: 0 additions & 83 deletions .ci-pipelines/build-matrix.yml

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65 changes: 0 additions & 65 deletions .ci-pipelines/quick-build.yml

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46 changes: 0 additions & 46 deletions .ci-pipelines/release.dockerfile

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53 changes: 0 additions & 53 deletions .ci-pipelines/release.yml

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3 changes: 0 additions & 3 deletions .gitmodules
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[submodule "docs/geos-chem-shared-docs"]
path = docs/source/geos-chem-shared-docs
url = https://github.com/geoschem/geos-chem-shared-docs.git
[submodule ".ci-pipelines/MinimumStandaloneTransportTracer"]
path = .ci-pipelines/MinimumStandaloneTransportTracer
url = https://github.com/geoschem/MinimumStandaloneTransportTracer.git
1 change: 0 additions & 1 deletion README.md
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<a href="http://wiki.seas.harvard.edu/geos-chem/index.php/GEOS-Chem_versions"><img src="https://img.shields.io/github/v/release/geoschem/GCHP?label=Latest%20Release"></a>
[![DOI](https://zenodo.org/badge/200900441.svg)](https://zenodo.org/badge/latestdoi/200900441)
<a href="https://gchp.readthedocs.io/en/latest/"><img src="https://img.shields.io/readthedocs/gchp?label=ReadTheDocs"></a>
<a href="https://dev.azure.com/geoschem/GCHP/_build"><img src="https://img.shields.io/azure-devops/build/geoschem/GCHP/20/main?label=Build%20Matrix"></a><br>
<a href="https://hub.docker.com/r/geoschem/gchp"><img src="https://img.shields.io/docker/v/geoschem/gchp?color=blue&label=Docker%2FSingularity"></a>
<a href="https://spack.readthedocs.io/en/latest/package_list.html#gchp"><img src="https://img.shields.io/badge/Install%20with-Spack-ff69b4"></a>
<a href="https://github.com/geoschem/GCHP/releases"><img src="https://img.shields.io/github/v/release/geoschem/GCHP?include_prereleases&label=Latest%20Pre-Release"></a>
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Expand Up @@ -524,7 +524,7 @@ subroutine prepare_massflux_exports(IMPORT, EXPORT, PLE, dt, RC)
! Get vertical mass flux
call fv_getVerticalMassFlux(MFX_EXPORT, MFY_EXPORT, UpwardsMassFlux, dt)
! Flip vertical so that GCHP diagnostic is positive="up"
UpwardsMassFlux(:,:,:) = UpwardsMassFlux(:,:,LM:0:-1)
UpwardsMassFlux(:,:,:) = UpwardsMassFlux(:,:,LM:0:-1)/dt
end if

_RETURN(ESMF_SUCCESS)
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2 changes: 1 addition & 1 deletion src/GCHP_GridComp/GEOSChem_GridComp/geos-chem
Submodule geos-chem updated 57 files
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+264 −0 Interfaces/GEOS/GEOSCHEMchem_Registry.rc
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+37 −36 run/GCClassic/HEMCO_Config.rc.templates/HEMCO_Config.rc.aerosol
+39 −39 run/GCClassic/HEMCO_Config.rc.templates/HEMCO_Config.rc.fullchem
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+2 −1 run/GCHP/GCHP.rc.template
+1 −1 run/GCHP/HEMCO_Config.rc.templates/HEMCO_Config.rc.CO2
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+14 −23 run/GCHP/archiveRun.sh
+3 −0 run/GCHP/checkRunSettings.sh
+47 −92 run/GCHP/createRunDir.sh
+1 −1 run/GCHP/gitignore
+1 −1 run/GCHP/init_rd.sh
+0 −766 run/GCHP/runConfig.sh.template
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+19 −12 run/GCHP/runScriptSamples/README
+0 −95 run/GCHP/runScriptSamples/gchp.adjoint.run
+157 −0 run/GCHP/runScriptSamples/gchp.batch_job.sh
+44 −0 run/GCHP/runScriptSamples/gchp.local.run
+0 −95 run/GCHP/runScriptSamples/gchp.pleiades.run
+75 −0 run/GCHP/runScriptSamples/operational_examples/adjoint/gchp.adjoint.run
+49 −0 run/GCHP/runScriptSamples/operational_examples/harvard_cannon/gchp.run
+34 −0 run/GCHP/runScriptSamples/operational_examples/harvard_cannon/gchp.submit_consecutive_jobs.sh
+0 −75 run/GCHP/runScriptSamples/operational_examples/harvard_gcst/gchp.benchmark.run
+0 −69 run/GCHP/runScriptSamples/operational_examples/harvard_gcst/gchp.local.run
+0 −185 run/GCHP/runScriptSamples/operational_examples/harvard_gcst/gchp.multirun.run
+0 −95 run/GCHP/runScriptSamples/operational_examples/harvard_gcst/gchp.multirun.sh
+0 −75 run/GCHP/runScriptSamples/operational_examples/harvard_gcst/gchp.run
+72 −0 run/GCHP/runScriptSamples/operational_examples/nasa_pleiades/gchp.pleiades.run
+1 −1 run/GCHP/runScriptSamples/operational_examples/wustl_gcst/c360_requeuing.sh
+0 −36 run/GCHP/runScriptSamples/simple_examples/simple_batch_job.lsf.sh
+0 −41 run/GCHP/runScriptSamples/simple_examples/simple_batch_job.pbs.sh
+0 −48 run/GCHP/runScriptSamples/simple_examples/simple_batch_job.slurm.sh
+0 −1 run/GCHP/runScriptSamples/system_examples/simple_batch_job.harvard_cannon.sh
+0 −1 run/GCHP/runScriptSamples/system_examples/simple_batch_job.nasa_pleiades.sh
+0 −1 run/GCHP/runScriptSamples/system_examples/simple_batch_job.wustl_compute1.sh
+599 −0 run/GCHP/setCommonRunSettings.sh.template
+2 −2 run/GCHP/setEnvironmentLink.sh
+37 −0 run/GCHP/setRestartLink.sh
+20 −20 run/GEOS/GEOSCHEMchem_ExtData.rc
+138 −11 run/GEOS/GEOSCHEMchem_GridComp.rc
+4 −1 run/shared/cleanRunDir.sh
+26 −36 test/GCHP/README
+0 −81 test/GCHP/gchp.lsf.sh
+28 −54 test/GCHP/gchp.slurm.sh
+27 −8 test/GCHP/intTestCreate.sh
+8 −13 test/shared/commonFunctionsForTests.sh
2 changes: 1 addition & 1 deletion src/MAPL

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