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GCHP crashes when I try to use a ".grid_label" and ".conservative" fields for any collection
Expected behavior:
GCHP runs sucessfully and regrids the output from native cubed sphere to the lat-lon grid.
Actual behavior:
GCHP crashes and has errors poinitng to MAPL (e.g. MAPL_HistoryGridComp.F90, MAPL_Generic.F90, etc.)
Steps to reproduce: the bug:
I used cmake and ifort 18. The standard environment used by Lizzie Lundgren.
Run commands
I used the gchp.run script (single run)
Error messages
Nothing says "add text here" but a lot of messages say "need informative message"
pe=00000 FAIL at line=01064 MAPL_HistoryGridComp.F90 <needs informative message>
pe=00000 FAIL at line=01829 MAPL_Generic.F90 <needs informative message>
pe=00000 FAIL at line=00614 MAPL_CapGridComp.F90 <status=1>
pe=00000 FAIL at line=00559 MAPL_CapGridComp.F90 <status=1>
pe=00001 FAIL at line=01064 MAPL_HistoryGridComp.F90 <needs informative message>
pe=00001 FAIL at line=01829 MAPL_Generic.F90 <needs informative message>
pe=00001 FAIL at line=00614 MAPL_CapGridComp.F90 <status=1>
pe=00001 FAIL at line=00559 MAPL_CapGridComp.F90 <status=1>
pe=00001 FAIL at line=00849 MAPL_CapGridComp.F90 <status=1>
pe=00001 FAIL at line=00322 MAPL_Cap.F90 <status=1>
pe=00001 FAIL at line=00198 MAPL_Cap.F90 <status=1>
pe=00001 FAIL at line=00157 MAPL_Cap.F90 <status=1>
pe=00002 FAIL at line=01064 MAPL_HistoryGridComp.F90 <needs informative message>
pe=00002 FAIL at line=01829 MAPL_Generic.F90 <needs informative message>
pe=00002 FAIL at line=00614 MAPL_CapGridComp.F90 <status=1>
pe=00002 FAIL at line=00559 MAPL_CapGridComp.F90 <status=1>
pe=00002 FAIL at line=00849 MAPL_CapGridComp.F90 <status=1>
pe=00002 FAIL at line=00322 MAPL_Cap.F90 <status=1>
pe=00002 FAIL at line=00198 MAPL_Cap.F90 <status=1>
pe=00002 FAIL at line=00157 MAPL_Cap.F90 <status=1>
pe=00002 FAIL at line=00131 MAPL_Cap.F90 <status=1>
pe=00002 FAIL at line=00029 GCHPctm.F90 <status=1>
pe=00003 FAIL at line=01064 MAPL_HistoryGridComp.F90 <needs informative message>
pe=00003 FAIL at line=01829 MAPL_Generic.F90 <needs informative message>
pe=00003 FAIL at line=00614 MAPL_CapGridComp.F90 <status=1>
pe=00003 FAIL at line=00559 MAPL_CapGridComp.F90 <status=1>
pe=00003 FAIL at line=00849 MAPL_CapGridComp.F90 <status=1>
pe=00003 FAIL at line=00322 MAPL_Cap.F90 <status=1>
pe=00003 FAIL at line=00198 MAPL_Cap.F90 <status=1>
pe=00003 FAIL at line=00157 MAPL_Cap.F90 <status=1>
pe=00003 FAIL at line=00131 MAPL_Cap.F90 <status=1>
pe=00003 FAIL at line=00029 GCHPctm.F90 <status=1>
pe=00005 FAIL at line=01064 MAPL_HistoryGridComp.F90 <needs informative message>
pe=00005 FAIL at line=01829 MAPL_Generic.F90 <needs informative message>
pe=00005 FAIL at line=00614 MAPL_CapGridComp.F90 <status=1>
pe=00005 FAIL at line=00559 MAPL_CapGridComp.F90 <status=1>
pe=00005 FAIL at line=00849 MAPL_CapGridComp.F90 <status=1>
pe=00005 FAIL at line=00322 MAPL_Cap.F90 <status=1>
pe=00005 FAIL at line=00198 MAPL_Cap.F90 <status=1>
...
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 5 in communicator MPI_COMM_WORLD
with errorcode 262146.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
In: PMI_Abort(262146, N/A)
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 21 in communicator MPI_COMM_WORLD
with errorcode 262146.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
In: PMI_Abort(262146, N/A)
--------------------------------------------------------------------------
...
see more in the log file
Required information:
Your GCHP version and runtime environment:
GCHPctm version (can be last commit hash): __ dev.gchp_13.0.0
MPI type and version: __
Fortran cmpiler type and version: __ifort 18
netCDF version: __
Are you using GCHP "out of the box" (i.e. unmodified): __ I added full column diagnostics for RRTMG, but these work if I don't try regridding the output
If you have modified GCHP, please list what was changed: __ see above
Input and log files to attach
runConfig.sh: __
input.geos: __
HEMCO_Config.rc: __
ExtData.rc: __
HISTORY.rc: __
GCHP compile log file: __
GCHP run log file: __
HEMCO.log: __
slurm.out or any other error messages from your scheduler: __
Any other error messages: __
see here on Cannon for all the above files: /n/holyscratch01/jacob_lab/jmoch/geoE_rdirs/GCHP_13.0.0_geoE_off_vtest2
the log file relevant is: slurm-6797176.out
This grid is one of the example grids defined at the top of the file:
# Example of lat-lon global grid at 1x1 resolution
PC144x91-DC.GRID_TYPE: LatLon
PC144x91-DC.IM_WORLD: 144
PC144x91-DC.JM_WORLD: 91
PC144x91-DC.POLE: PC
PC144x91-DC.DATELINE: DC
PC144x91-DC.LM: 72
Using this grid, however, is not going to work because that grid is not listed in the GRID_LABELS list which tells MAPL which grids to understand:
The GRID_LABELS list is similar to the diagnostic collections list in that anything excluded or commented out within it will simply be ignored elsewhere in the file. I think adding PC144x91-DC to the list will make the issue go away.
I will update the template to either remove that example or add it to the grid label list so other users don't make this mistake as well.
Describe the bug:
GCHP crashes when I try to use a ".grid_label" and ".conservative" fields for any collection
Expected behavior:
GCHP runs sucessfully and regrids the output from native cubed sphere to the lat-lon grid.
Actual behavior:
GCHP crashes and has errors poinitng to MAPL (e.g. MAPL_HistoryGridComp.F90, MAPL_Generic.F90, etc.)
Steps to reproduce: the bug:
I used cmake and ifort 18. The standard environment used by Lizzie Lundgren.
Run commands
I used the gchp.run script (single run)
Error messages
Required information:
Your GCHP version and runtime environment:
Input and log files to attach
see here on Cannon for all the above files: /n/holyscratch01/jacob_lab/jmoch/geoE_rdirs/GCHP_13.0.0_geoE_off_vtest2
the log file relevant is: slurm-6797176.out
Additional context
gchp.log
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