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help.txt
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help.txt
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Usage: %s [-n n] [-r r] [-c condition] [-hCSp]
Generates all orchard networks (in fact MCRSs) over {1,...,n} and r reticulations.
The following options can be set to modify the behaviour of the generator.
Mandatory:
-n n number of leaves
-r r number of reticulations
Restriction (optional):
-c, --condition none generate orchard networks (default)
-c, --condition tc restrict to tree-child networks
-c, --condition sf restrict to stack-free networks
Misc (optional):
-p, --partials generate all nets with <=r reticulations
-S, --print-sequence print the generated MCRSs to stdout
-C, --print-count print the total count of generated MCRSs to stdout
-m, --more-counts print count of generated MCRSs for each r=0..R (-p and -C must be activated)
-h, --help Display this help message
Examples of usage:
- Show all orchard networks with 3 leaves and exactly 1 reticulation
%s -n3 -r1 -S
- Count all tree-child networks with 6 leaves
%s -n6 -r5 -c tc -Cp