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00_missRanger_output.txt
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00_missRanger_output.txt
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# Amphibole
> amph_elems <- missRanger(amph_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, COO, ZNO, AS_ppm, PBO, ZRO2
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
AL2O3 CAO MGO TIO2 NA2O K2O MNO FEOT CR2O3 CL F NIO H20 P2O5 ZRO2 ZNO AS_ppm PBO COO
iter 1: 0.6266 0.5809 0.4690 0.3087 0.1781 0.2423 0.1885 0.0344 0.5380 0.3673 0.2058 0.6120 0.3420 0.3679 0.6393 0.8529 0.0000 0.0000 0.0000
iter 2: 0.0083 0.0165 0.0114 0.0168 0.0151 0.0252 0.0488 0.0071 0.0742 0.1236 0.0338 0.3431 0.0421 0.2269 0.2020 0.8206 0.0000 0.0000 0.0000
iter 3: 0.0095 0.0157 0.0106 0.0182 0.0132 0.0272 0.0396 0.0072 0.0771 0.1041 0.0288 0.3455 0.0370 0.3082 0.1579 0.6049 0.0000 0.0000 0.0000
iter 4: 0.0090 0.0171 0.0094 0.0193 0.0132 0.0290 0.0438 0.0071 0.0660 0.1155 0.0296 0.3338 0.0579 0.2764 0.2029 0.7498 0.0000 0.0000 0.0000
> mean(rowSums(amph_elems), na.rm = T)
[1] 99.99242
> col.fillrate(amph_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Apatite
> apat_elems <- missRanger(apat_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, H20, F, CL, NIO, ZNO, PBO, S, ZRO2
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
CAO F SIO2 CL NA2O FEOT MNO MGO AL2O3 H20 K2O TIO2 CR2O3 ZRO2 NIO ZNO PBO S
iter 1: 0.3193 0.9185 0.1806 0.7496 0.6527 0.5012 0.6924 0.0372 0.8360 0.1632 0.8544 0.0075 0.0481 0.3194 0.9987 0.0000 0.0000 0.9298
iter 2: 0.0084 0.0330 0.0228 0.1052 0.1388 0.1124 0.3404 0.0172 0.7163 0.0601 0.7018 0.0027 0.0340 0.0925 0.4584 0.0000 0.0000 1.0437
iter 3: 0.0083 0.0305 0.0250 0.0941 0.1229 0.1192 0.3228 0.0156 0.7382 0.0609 0.7043 0.0016 0.0346 0.0798 0.3933 0.0000 0.0000 1.1672
> mean(rowSums(apat_elems))
[1] 98.82924
> col.fillrate(apat_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Carbonates
> carb_elems <- missRanger(carb_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, MGO, MNO, K2O, NA2O, P2O5, F, CL, NIO, ZNO, PBO, S, ZRO2
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
MGO FEOT MNO NA2O SIO2 AL2O3 K2O P2O5 TIO2 F ZNO CL CR2O3 NIO PBO S ZRO2
iter 1: 0.6660 0.6766 0.7033 0.7388 0.8861 0.2988 0.4013 0.1179 0.8395 0.6596 0.8277 0.5633 1.0642 0.9277 0.0000 0.6982 1.1655
iter 2: 0.0347 0.0717 0.2084 0.0542 0.3595 0.1193 0.1102 0.0984 0.5193 0.4411 0.5336 0.3666 0.6562 0.5228 0.0000 0.5449 1.2784
iter 3: 0.0325 0.0696 0.1682 0.0718 0.3932 0.1279 0.0960 0.0811 0.5075 0.4355 0.4306 0.3535 0.5832 0.5332 0.0000 0.5047 1.1959
iter 4: 0.0448 0.0605 0.1602 0.0734 0.3570 0.1336 0.1119 0.0755 0.4804 0.4211 0.4648 0.3634 0.4497 0.5062 0.0000 0.4706 1.2585
iter 5: 0.0440 0.0612 0.1447 0.0703 0.4270 0.1396 0.0939 0.0868 0.4728 0.4374 0.4349 0.3875 0.6007 0.5902 0.0000 0.4787 1.3839
> mean(rowSums(carb_elems))
[1] 55.56615
> col.fillrate(carb_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Clay Minerals
> clay_elems <- missRanger(clay_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, CL, NIO
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
CAO AL2O3 MGO NA2O K2O TIO2 MNO FEOT P2O5 CR2O3 NIO H20 CL
iter 1: 0.9924 0.9392 0.6620 0.9464 0.7355 0.8767 0.7908 0.3607 0.5883 1.0121 0.8757 0.9091 1.2906
iter 2: 0.3117 0.1140 0.0832 0.3445 0.1499 0.6840 0.2135 0.0985 0.2387 0.9880 0.3217 0.5728 1.3856
iter 3: 0.2538 0.1132 0.0760 0.3719 0.1585 0.6583 0.1847 0.0819 0.2087 0.8929 0.3553 0.4745 1.3299
iter 4: 0.1999 0.1106 0.0706 0.3163 0.1429 0.6820 0.1914 0.1060 0.2355 0.9141 0.3470 0.5709 1.3216
> mean(rowSums(clay_elems))
[1] 101.6145
> col.fillrate(clay_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Feldspars
> felds_elems <- missRanger(felds_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, F, CL, NIO, ZNO, AS_ppm, ZRO2
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
AL2O3 NA2O CAO K2O FEOT MGO TIO2 MNO CR2O3 NIO P2O5 CL F ZNO ZRO2 AS_ppm
iter 1: 0.5285 0.5860 0.2464 0.0503 0.3443 0.3554 0.2498 0.9667 0.9347 0.7960 0.8919 0.5668 0.8505 0.0000 0.0000 1.0874
iter 2: 0.0031 Growing trees.. Progress: 100%. Estimated remaining time: 0 seconds.
0.0048 0.0014 0.0020 0.0644 0.1310 0.0157 0.8747 0.2410 0.4753 0.4827 0.1916 0.4164 0.0000 0.0000 1.0445
iter 3: Growing trees.. Progress: 91%. Estimated remaining time: 3 seconds.
0.0027 0.0051 0.0022 0.0025 0.0602 0.1227 0.0151 0.8908 0.2618 0.5081 0.3947 0.2446 0.4765 0.0000 0.0000 1.0449
> mean(rowSums(felds_elems))
[1] 100.014
> col.fillrate(felds_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Feldspathoide
> foid_elems <- missRanger(foid_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, COO, ZNO, S
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
AL2O3 NA2O K2O CAO FEOT MGO TIO2 MNO CL CR2O3 NIO P2O5 F H20 S COO ZNO
iter 1: 0.5299 0.4746 0.2839 0.2625 0.4206 0.2173 0.8243 0.9938 0.1178 0.9945 0.9732 1.0626 0.7634 0.4445 0.5963 0.0000 0.0000
iter 2: 0.0299 0.0085 0.0086 0.0362 0.1601 0.1236 0.5336 0.4387 0.0317 0.2592 0.7740 1.0010 0.4964 0.2001 0.2930 0.0000 0.0000
iter 3: 0.0270 0.0083 0.0098 0.0274 0.1508 0.0695 0.4665 0.4107 0.0300 0.2453 0.7896 0.9908 0.4721 0.2264 0.4392 0.0000 0.0000
iter 4: 0.0279 0.0095 0.0101 0.0359 0.1523 0.1058 0.5715 0.4461 0.0283 0.2577 0.6980 0.9750 0.3196 0.2118 0.3062 0.0000 0.0000
iter 5: 0.0359 0.0078 0.0094 0.0383 0.1680 0.0795 0.4801 0.4049 0.0263 0.2414 0.6948 0.9733 0.4170 0.2338 0.3095 0.0000 0.0000
iter 6: 0.0343 0.0073 0.0096 0.0349 0.1454 0.1116 0.4588 0.5173 0.0300 0.2955 0.7367 0.9781 0.4583 0.2014 0.3460 0.0000 0.0000
> mean(rowSums(foid_elems))
[1] 104.6951
> col.fillrate(foid_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Garnet
> grt_elems <- missRanger(grt_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, ZNO, S, ZRO2
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
AL2O3 CAO MGO TIO2 MNO FEOT CR2O3 NA2O K2O NIO P2O5 ZRO2 ZNO F CL H20 S
iter 1: 0.6315 0.3799 0.2820 0.2510 0.1808 0.0223 0.0389 0.7968 0.4528 0.8096 0.7237 0.0173 0.9969 0.5893 0.8600 0.2153 0.0000
iter 2: 0.0043 0.0035 0.0032 0.0163 0.0226 0.0032 0.0053 0.4184 0.3009 0.3857 0.2959 0.0086 0.2518 0.3829 0.4231 0.2119 0.0000
iter 3: 0.0044 0.0033 0.0029 0.0137 0.0209 0.0030 0.0053 0.4698 0.2062 0.3862 0.2680 0.0089 0.2352 0.4027 0.4123 0.1833 0.0000
iter 4: 0.0038 0.0034 0.0030 0.0157 0.0251 0.0028 0.0047 0.4016 0.2163 0.3562 0.2788 0.0068 0.2504 0.3643 0.3936 0.2490 0.0000
iter 5: 0.0038 0.0035 0.0027 0.0132 0.0239 0.0036 0.0051 0.4059 0.2335 0.3738 0.2633 0.0086 0.2307 0.4312 0.3973 0.1890 0.0000
> mean(rowSums(grt_elems))
[1] 101.0924
> col.fillrate(grt_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Ilmenite
> ilm_elems <- missRanger(ilm_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: SIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, COO, ZNO, ZRO2
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
MGO MNO AL2O3 CR2O3 FEOT SIO2 CAO NIO ZNO NA2O K2O ZRO2 P2O5 COO CL F H20
iter 1: 0.8037 0.8669 0.4231 0.6295 0.1040 0.3523 0.7987 0.6190 0.8634 0.8412 0.9776 0.7909 0.6837 1.0331 0.3339 0.7875 0.0000
iter 2: 0.0111 0.0716 0.1116 0.1018 0.0264 0.1622 0.4258 0.1347 0.1939 0.2289 0.8313 0.2223 0.3827 0.9280 0.1700 0.5957 0.0000
iter 3: 0.0110 0.0739 0.1367 0.0969 0.0245 0.1640 0.4075 0.1071 0.2263 0.2928 0.7424 0.2180 0.3813 0.9701 0.1754 0.5558 0.0000
iter 4: 0.0109 0.0684 0.1231 0.1051 0.0224 0.1823 0.4470 0.0816 0.2106 0.2522 0.7659 0.2267 0.4049 0.9186 0.2593 0.5896 0.0000
> mean(rowSums(ilm_elems))
[1] 98.8873
> col.fillrate(ilm_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Micas
> mica_elems <- missRanger(mica_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
SIO2 AL2O3 MGO K2O TIO2 NA2O MNO FEOT CAO CR2O3 F CL NIO H20 P2O5
iter 1: 1.0001 0.9137 0.7254 0.7904 0.6255 0.6888 0.4299 0.1543 0.5456 0.5003 0.3483 0.3422 0.9017 0.3610 0.8054
iter 2: 0.0371 0.0176 0.0073 0.0534 0.0500 0.0548 0.0494 0.0063 0.0881 0.1221 0.0231 0.0872 0.5515 0.0616 0.4269
iter 3: 0.0378 0.0186 0.0060 0.0498 0.0455 0.0544 0.0406 0.0073 0.0739 0.1118 0.0259 0.0749 0.4487 0.0534 0.4094
iter 4: 0.0366 0.0150 0.0061 0.0528 0.0500 0.0557 0.0458 0.0068 0.0964 0.1127 0.0195 0.0677 0.6367 0.0481 0.4297
> mean(rowSums(mica_elems))
[1] 99.30365
> col.fillrate(mica_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Olivines
> oliv_elems <- missRanger(oliv_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, S, ZRO2
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
MGO FEOT CAO MNO NIO AL2O3 CR2O3 TIO2 NA2O K2O P2O5 ZNO CL COO F H20 ZRO2 AS_ppm CUO S
iter 1: 0.5098 0.3561 0.0207 0.0429 0.6068 0.1521 0.9130 0.9412 0.3889 0.4148 0.5713 0.0000 0.0000 0.0000 0.0000 1.0813 0.0000 0.0000 0.0000 0.0000
iter 2: 0.0087 0.0058 0.0110 0.0152 0.3416 0.0312 0.3993 0.3696 0.1687 0.2157 0.2375 0.0000 0.0000 0.0000 0.0000 1.0389 0.0000 0.0000 0.0000 0.0000
iter 3: 0.0067 0.0048 0.0082 0.0161 0.3525 0.0429 0.4520 0.4626 0.1340 0.1667 0.2661 0.0000 0.0000 0.0000 0.0000 1.0412 0.0000 0.0000 0.0000 0.0000
> col.fillrate(oliv_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
> mean(rowSums(oliv_elems))
[1] 100.5033
# Perovskite
> perov_elems <- missRanger(perov_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, ZNO, PBO, ZRO2
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
TIO2 NA2O AL2O3 MGO FEOT SIO2 MNO K2O CR2O3 ZRO2 NIO F P2O5 ZNO PBO H20 CL
iter 1: 0.5696 0.2385 0.7416 0.8896 0.2290 0.2715 0.9785 0.7223 0.4149 0.4497 0.9913 0.3760 0.8849 0.9558 0.9954 1.3216 1.4093
iter 2: 0.0302 0.0364 0.0999 0.4210 0.1883 0.2278 0.8127 0.2270 0.1561 0.1381 0.1969 0.0758 0.6429 0.7411 0.6647 1.2600 1.4351
iter 3: 0.0384 0.0319 0.0944 0.4667 0.2602 0.1804 0.8274 0.1932 0.1628 0.1244 0.2325 0.0866 0.6095 0.5209 0.3477 1.4150 1.4107
iter 4: 0.0357 0.0372 0.0974 0.4522 0.2699 0.1408 0.8232 0.2766 0.1812 0.1273 0.2128 0.0933 0.6000 0.7401 0.5402 1.3020 1.4599
> mean(rowSums(perov_elems))
[1] 94.63243
> col.fillrate(perov_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Pyroxenes
> px_elems <- missRanger(px_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, ZNO, S, ZRO2
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
CAO MGO AL2O3 TIO2 MNO NA2O FEOT CR2O3 K2O NIO P2O5 CL F ZRO2 H20 ZNO S
iter 1: 0.8857 0.5112 0.5000 0.3472 0.2821 0.1774 0.0455 0.4580 0.3218 0.6286 0.8010 0.0000 0.0000 0.8790 0.5343 0.0000 0.0000
iter 2: 0.0070 0.0116 0.0197 0.0248 0.0656 0.0355 0.0122 0.1246 0.1482 0.1833 0.2035 0.0000 0.0000 0.5847 0.3578 0.0000 0.0000
iter 3: 0.0057 0.0125 0.0235 0.0230 0.0747 0.0295 0.0103 0.1201 0.1544 0.1793 0.2195 0.0000 0.0000 0.5593 0.4456 0.0000 0.0000
> mean(rowSums(px_elems))
[1] 100.2722
> col.fillrate(px_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Quartzo
> qtz_elems <- missRanger(qtz_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, F, CL, NIO, ZNO
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
AL2O3 CAO TIO2 K2O NA2O FEOT MGO MNO CR2O3 P2O5 CL F ZNO NIO
iter 1: 0.8032 0.7216 0.4999 0.2121 0.5240 0.1324 0.0926 0.9556 0.8712 0.7526 0.0000 0.0000 0.0000 1.0169
iter 2: 0.1619 0.1031 0.1514 0.0504 0.3300 0.0363 0.0508 0.5012 0.5200 0.3994 0.0000 0.0000 0.0000 0.9501
iter 3: 0.1295 0.1564 0.1771 0.0554 0.3369 0.0391 0.0580 0.5183 0.5487 0.4311 0.0000 0.0000 0.0000 0.9121
> mean(rowSums(qtz_elems))
[1] 99.32192
> col.fillrate(qtz_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Spinels
> spin_elems <- missRanger(spin_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: SIO2, TIO2, AL2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, PBO, ZRO2
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
AL2O3 MGO TIO2 MNO SIO2 CAO NIO FEOT NA2O K2O ZNO P2O5 CL ZRO2 F COO CUO H20 PBO
iter 1: 0.8430 0.2438 0.3657 0.1848 0.7164 0.6860 0.1442 0.0134 0.4171 0.5640 0.6410 0.3374 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
iter 2: 0.0086 0.0148 0.0226 0.0382 0.1626 0.2161 0.0432 0.0040 0.2294 0.3951 0.1404 0.1356 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
iter 3: 0.0076 0.0104 0.0189 0.0377 0.1695 0.1839 0.0431 0.0053 0.2405 0.4496 0.1023 0.1128 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
iter 4: 0.0075 0.0119 0.0203 0.0315 0.1545 0.2200 0.0466 0.0041 0.2543 0.4213 0.0990 0.1386 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
> mean(rowSums(spin_elems))
[1] 97.5369
> col.fillrate(spin_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Sulfides
> sulf_elems <- missRanger(sulf_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: FEOT, CAO, K2O, NA2O, NIO, CUO, COO, ZNO, AS_ppm, PBO
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
FEOT NIO CUO COO ZNO AS_ppm PBO CAO K2O NA2O
iter 1: 0.8045 0.8064 0.6973 0.8126 0.7418 0.2916 0.1668 1.2273 1.2162 1.2927
iter 2: 0.0449 0.0536 0.0541 0.2517 0.2077 0.0589 0.0588 1.1410 1.2300 1.1939
iter 3: 0.0505 0.0364 0.0589 0.2172 0.2182 0.0734 0.0610 1.2775 1.2178 1.1828
> mean(rowSums(sulf_elems)-sulf_elems$AS_ppm)
[1] 125.0995
> col.fillrate(sulf_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Titanite
> titan_elems <- missRanger(titan_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: SIO2, AL2O3, CR2O3, FEOT, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, ZNO, PBO, ZRO2
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
SIO2 AL2O3 NA2O MNO MGO FEOT K2O F ZRO2 CR2O3 P2O5 CL ZNO NIO H20 PBO
iter 1: 0.5267 0.5113 0.8767 0.6343 0.6671 0.0554 0.3414 0.1440 0.6058 0.5660 0.0276 0.9014 0.5823 0.6997 0.9188 0.7648
iter 2: 0.0626 0.0658 0.3331 0.1809 0.4345 0.0155 0.2794 0.0512 0.2580 0.4527 0.0172 0.3683 0.3634 0.3733 0.8402 0.8524
iter 3: 0.0583 0.0812 0.3169 0.1529 0.4169 0.0168 0.2386 0.0562 0.2623 0.5564 0.0091 0.3798 0.2767 0.4856 0.8592 1.0139
> mean(rowSums(titan_elems))
[1] 99.506
> col.fillrate(titan_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100
# Zircon
> zirc_elems <- missRanger(zirc_elems, pmm.k = 3, num.trees = 100, verbose = 2)
Missing value imputation by random forests
Variables to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, F, CL, NIO, PBO
Variables used to impute: SIO2, TIO2, AL2O3, CR2O3, FEOT, CAO, MGO, MNO, K2O, NA2O, P2O5, H20, F, CL, NIO, CUO, COO, ZNO, AS_ppm, PBO, S, ZRO2
SIO2 AL2O3 CAO FEOT TIO2 P2O5 PBO F MGO MNO CL CR2O3 NA2O K2O NIO
iter 1: 0.6732 0.0000 0.0000 0.0000 0.9868 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
iter 2: 0.6035 0.0000 0.0000 0.0000 0.6886 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
iter 3: 0.5445 0.0000 0.0000 0.0000 0.7397 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
iter 4: 0.7105 0.0000 0.0000 0.0000 0.7845 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
> mean(rowSums(zirc_elems))
[1] 96.61468
> col.fillrate(zirc_elems)
Column.Name Fill.Rate
1 SIO2 100
2 TIO2 100
3 AL2O3 100
4 CR2O3 100
5 FEOT 100
6 CAO 100
7 MGO 100
8 MNO 100
9 K2O 100
10 NA2O 100
11 P2O5 100
12 H20 100
13 F 100
14 CL 100
15 NIO 100
16 CUO 100
17 COO 100
18 ZNO 100
19 AS_ppm 100
20 PBO 100
21 S 100
22 ZRO2 100