R-CMD-check.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: [main, master]
  pull_request:
    branches: [main, master]

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macos-latest,   r: 'release'}
          - {os: windows-latest, r: 'release'}
          - {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
          - {os: ubuntu-latest,  r: 'release'}

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      _R_CHECK_FORCE_SUGGESTS_: false

    steps:
      - name: Install deps on MacOS
        if: runner.os == 'macOS'
        run: |
          brew install --cask xquartz
          brew install cairo
          brew install udunits
        shell: bash

      - uses: actions/checkout@v3
      - uses: r-lib/actions/setup-tinytex@v2
      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          pak-version: devel
          extra-packages: |
            any::rcmdcheck
            nlmixr2/lotri
            nlmixr2/rxode2ll
            nlmixr2/rxode2parse
            nlmixr2/rxode2random
            nlmixr2/rxode2et
            nlmixr2/rxode2
            nlmixr2/nlmixr2est
            nlmixr2/nlmixr2extra
            nlmixr2/nlmixr2plot
            nlmixr2/nlmixr2
            lixoftConnectors=?ignore
          needs: check
          
      - run: tlmgr --version
        
      - uses: r-lib/actions/check-r-package@v2
        with:
          build_args: 'c("--no-manual", "--compact-vignettes=gs+qpdf")'
          upload-snapshots: true