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Allow to generate largest probe possible when not enough oligos are found #23

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ggirelli opened this issue Feb 3, 2021 · 1 comment · Fixed by #30
Closed

Allow to generate largest probe possible when not enough oligos are found #23

ggirelli opened this issue Feb 3, 2021 · 1 comment · Fixed by #30
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@ggirelli
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ggirelli commented Feb 3, 2021

Is your feature request related to a problem? Please describe.
If not enough oligos are present in the region of interest, the script stops.

Describe the solution you'd like
Generate the largest probe possible. Of course, stop if no oligos are found. Also, include a script option to roll back to the old behavior of stopping if not enough oligos are present, for scenarios where the number of oligos needs to match exactly the requested number.

@ggirelli ggirelli self-assigned this Feb 3, 2021
@ggirelli ggirelli added the enhancement New feature or request label Feb 3, 2021
@ggirelli ggirelli added this to To do in v2.0.4 Feb 3, 2021
@ggirelli ggirelli added this to the v2.0.4 milestone Feb 3, 2021
@ggirelli ggirelli moved this from To do to In progress in v2.0.4 Feb 10, 2021
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Implemented in v2.0.4 (to be released). Use --exact-n-oligo to revert to previous behavior (i.e., raises AssertError).

v2.0.4 automation moved this from In progress to Done Feb 10, 2021
@ggirelli ggirelli linked a pull request Feb 11, 2021 that will close this issue
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