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Clarify that genome details are facultative #24

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ggirelli opened this issue Feb 3, 2021 · 2 comments · Fixed by #30
Closed

Clarify that genome details are facultative #24

ggirelli opened this issue Feb 3, 2021 · 2 comments · Fixed by #30
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@ggirelli
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ggirelli commented Feb 3, 2021

Is your feature request related to a problem? Please describe.
Genome details are required when generating an iFISH database, which is cumbersome for scenarios where the database is designed for a transcriptome or other subset regions, or when no reference is available on UCSC or other DAS services.

Describe the solution you'd like
Clarify that the --no-net option can be used to skip any online check (e.g., reference) and that the reference is used to query the DAS server only when the database is generated without including the sequences.

@ggirelli ggirelli self-assigned this Feb 3, 2021
@ggirelli ggirelli added the enhancement New feature or request label Feb 3, 2021
@ggirelli ggirelli added this to To do in v2.0.4 Feb 3, 2021
@ggirelli ggirelli added this to the v2.0.4 milestone Feb 3, 2021
@ggirelli ggirelli moved this from To do to In progress in v2.0.4 Feb 10, 2021
@ggirelli
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Even better, drop the option of a sequence-less database and remove any network-related check.

@ggirelli
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Dropped network checks (and web module) in v2.0.4 (to be released).

v2.0.4 automation moved this from In progress to Done Feb 11, 2021
@ggirelli ggirelli linked a pull request Feb 11, 2021 that will close this issue
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