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ingest_config.md

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IngestConfig

Config options for calling the file ingest endpoint

Properties

  • submission_store_dir (string, format: path): The directory where the submission JSONs will be stored.

  • file_ingest_baseurl (string): Base URL under which the /ingest endpoint is available. This is an endpoint exposed by GHGA Central. This value is provided by GHGA Central on demand.

  • file_ingest_federated_endpoint (string): Path to the FIS endpoint (relative to baseurl) expecting the new style"+" upload metadata including a secret ID instead of the actual secret.

  • file_ingest_legacy_endpoint (string): Path to the FIS endpoint (relative to baseurl) expecting the old style"+"upload metadata including the encryption secret.

  • file_ingest_pubkey (string): Public key provided by GHGA Central used to encrypt the communication with GHGA Central.

  • input_dir (string, format: path): Path to directory containing output files from the upload/batch_upload command.

  • map_files_fields (array): Names of the accession map fields for looking up the alias->accession mapping. Default: ["study_files"].

    • Items (string)