HISTORY.rst

History

1.9.2 (2023-08-11)

• !39: Fixed RANSAC deprecation warning and bumped minimal version of scikit-learn to 0.21.0.
• !40: Fixed warnings during package build process.

1.9.1 (2023-06-16)

• Removed dill from requirements.
• !37: Fixed issue #82 (IndexError: cannot do a non-empty take from an empty axes) which happened in case COREG_LOCAL could not find a single tie point.
• !38: Updated CI (now faster) and environment file (now uses conda where ever possible).

1.9.0 (2023-05-04)

• Re-implemented interpolation of tie point attributes into space (!23). Three techniques are now supported: RBF, GPR, and Ordinary Kriging. Added scikit-learn to dependencies.
• Fixed GDAL warning related to PROJ_DATA/PROJ_LIB environment variables (!34).
• Added parameter 'rs_random_state' (RANSAC random state) and set it to 0 by default (!35).

1.8.1 (2023-03-10)

• Fixed GFZ#20 (out_crea_options has no effect) (!32).
• Updated copyright (!33).

1.8.0 (2022-12-02)

• Replaced CentOS CI container with an Ubuntu-based one (!31).
• Removed version pinning of pyfftw. AROSICS now uses numpy instead of pyfftw>=0.13.0 (!30).
• Added Python 3.11 classifiers and dropped support for Python 3.7 due to near EOL status (!30).
• Fixed DeprecationWarnings (2x matplotlib, 1x pandas) (!30).
• Dropped deprecated 'arosics_cli.py' entry point.

1.7.9 (2022-11-21)

• Allow pyfftw=0.13.0=*0 (!28).
• Replaced deprecated URL (!28).
• Updated copyright (!29).

1.7.8 (2022-08-19)

• Fixed missing grid and frame lines of Tie_Point_Grid.plot_shift_distribution() (!27).
• Remove deprecated sphinx_autodoc_typehints option.

1.7.7 (2022-07-21)

• Added a validation to reject images that only contain nodata values.

1.7.6 (2022-01-31)

• Fixed typo in requirements.

1.7.5 (2022-01-28)

• Implemented a workaround for #71 (pyFFTW RuntimeError: Undefined plan with nthreads. This is a bug). Pin pyFFTW to <0.13.0. (!25)

1.7.4 (2021-12-15)

• Migrated test calls from nosetests to pytest and implemented new test report (!24).
• Removed folium 0.12.1 exclusion due to fix on PyPI and conda-forge.
• Fixed dead link.

1.7.3 (2021-12-02)

• Avoid folium 0.12.1 as requirement due to python-visualization/folium#1513.

1.7.2 (2021-11-09)

• Listed dill in package requirements.
• Resolved inconsistency in documenting boolean default values.
• Improved error message when trying to compute statistics and all tie points are flagged as false-positives.

1.7.1 (2021-10-13)

• Added more statistics to Tie_Point_Grid.calc_overall_stats().

1.7.0 (2021-09-30)

• Added method Tie_Point_Grid.calc_overall_stats() + test to compute overall statistics from all tie points found.

1.6.2 (2021-09-29)

• Fixed 'too many values to unpack' exception in COREG_LOCAL.view_CoRegPoints().
• Added new parameters to Tie_Point_Grid.plot_shift_distribution().
• Added documentation to COREG_LOCAL.view_CoRegPoints().

1.6.1 (2021-09-29)

• The output map of COREG_LOCAL.view_CoRegPoints() is now cropped nicely. Added parameter 'figsize_multiplier'.

1.6.0 (2021-09-27)

• CI now uses Mambaforge.
• Switched to Apache 2.0 license.

1.5.1 (2021-08-11)

• Added project URLs to setup.py.
• Revised test_arosics_install CI job (now uses mamba).
• Updated minimal version of py_tools_ds which fixes #63 (Computing footprint error).

1.5.0 (2021-07-13)

• COREG.show_matchWin() now also works when no valid shift was found yet.
• Updated minimal version of geoarray to fix a sporadic TypeError when writing the coregistered result.
• Added basic compatibility with images that have a rotation in the map info (fixes #60).
• Fixed incorrect tolerance in COREG.equalize_pixGrids() which speeds up COREG_LOCAL a lot.

1.4.8 (2021-07-06)

• Updated HISTORY.rst (closes #46).
• Updated minimal version of py_tools_ds which fixes #61 (Multiprocessing issue).

1.4.7 (2021-07-03)

• Set minimal Python version to 3.6 in setup.py.
• Updated minimal version of py_tools_ds which fixes #59 (argmax error when not specifying poly WKT).
• Removed requirements_dev.txt and requirements_pip.txt as they are not needed anymore.

1.4.6 (2021-06-22)

• Updated minimal version of py_tools_ds which fixes #49 (Deadlock in Multiprocessing on Linux, in case GDAL 3.2.1 is installed.).

1.4.5 (2021-06-21)

• Fixed issue #56 (Setting align_grids to False in case of global co-registration does not avoid resampling.).

1.4.4 (2021-06-18)

• Removed non-operational tests.
• Apply 'make lint' to the whole package.
• Moved arosics_cli.py from bin to arosics folder to avoid entry point issues at conda-forge.
• Replaced some http links with https.
• The tie point grid now also includes the last x any y grid points (bugfix).

1.4.3 (2021-05-08)

• Clearer error message in case of unequal input projections that have equal names.
• Updated minimal version of geoarray.
• Reverted .gitlab-ci.yml.

1.4.2 (2021-05-08)

• Temporarily disabled installation check.
• Remove updates of py_tools_ds and geoarray for now.
• Updated minimal versions of geoarray and py_tools_ds. Updated installation.rst.
• Caught a warning in case the footprint polygon has disjunct polygons.
• Increased tolerance when snapping clip extent to output grid in DESHIFTER (fixes GFZ#4 (SSIM fails with window shape mismatch error)).

1.4.1 (2021-04-30)

• Deprecated the 'arosics_cli.py' argument parser call and added a new entrypoint called 'arosics'.
• Temporarily increase the URLChecker timeout to 60 secs due to Zenodo latency.

1.4.0 (2021-04-23)

• Temporarily set URLChecker timeout to 30 secs due to Zenodo latency.
• Updated projection related documentation.
• Added test which covers an input projection other than UTM and LonLat and which has no corresponding EPSG code.
• Updated minimal version of geoarray to v0.11.0 which brings no-EPSG compatibility.
• Replaced all UTM specific code and refactored tie point grid table columns 'X_UTM' and 'Y_UTM' to 'X_MAP' and 'Y_MAP'. This allows to run arosics on input images with projections other than UTM and Lon/Lat.
• Replaces EPSG related parameters by WKT string to get rid of missing EPSG issue.
• Updated copyright.
• Improved documentation.
• Added tolerance when comparing coordinate grids with float values.
• Improved docstring for COREG parameters wp and ws.
• Fixed inaccurate type hint.
• Removed unnecessary import.
• Fix typo.

1.3.0 (2021-03-12)

• Replaced Python 2 compatible type hints by PEP 484 type hints.
• Revised docstrings.
• Fixed a lot of Sphinx build warnings. Some code style improvements.
• Dropped support for Python versions below 3.6.
• Replaced deprecated np.object type.
• Make lint now directly prints its output in case of exceptions.
• Removed deprecated coreg_cmd.py. Fixed typo.

1.2.6 (2021-02-16)

• Fixed CI job.
• Fixed pyproj DeprecationWarning related to proj4 string. Added pyproj to dependencies (which was already used under the hood).
• Fixed DeprecationWarning related to deprecated numpy data types that are only aliases for builtin types.
• Added type hints for COREG_LOCAL.tiepoint_grid and COREG_LOCAL.CoRegPoints_table.

1.2.5 (2021-02-02)

• Excluded folium 0.12.0 from requirements due to python-visualization/folium#1438.
• Fixed incompletely deleted coverage artifacts after running 'make clean'.
• Fixed wrong dependency name.
• Updated URLs due to changes on the server side.
• Removed tests for issue 70 and 47.
• Commented rever CI job out.
• Added URL checker CI job and fixed all dead URLs. Removed travis related file
• Fixed issue of remaining coverage artifacts after running 'make clean-test'.

1.2.4 (2021-02-02)

• Caught the no-tie-points-found-case in some methods of Tie_Point_Grid.

1.2.3 (2020-11-13)

• Fixed KeyError 'ABS_SHIFT' in Tie_Point_Grid.plot_shift_distribution() in case no tie points have been found at all.

1.2.2 (2020-11-13)

• Fixed issue #47 (COREG_LOCAL.view_CoRegPoints() raises KeyError: 'X_SHIFT_M' error when there are too many clouds).
• Increased default figsize of COREG_LOCAL.view_CoRegPoints().

1.2.1 (2020-11-11)

• Added 'coverage erase' to clean-test.
• Fixed issue #45 (CoReg gives ValueError: min_samples must be in range (0, <number-of-samples>)`).
• Replaced deprecated osgeo imports.

1.2.0 (2020-11-02)

• Fixed issue 44 (SSIM filtering flags too much tie points in case of completely different data ranges of the input images).

1.1.1 (2020-11-02)

• Replaced deprecated osgeo imports.

1.1.0 (2020-10-30)

• Added a warning in case the input image consists of multiple patches and AROSICS processes only the largest one.
• Added a warning in case the reliability filtering filters more than 70% of the tie points.
• Fixed issue #43 (AttributeError in case COREG_LOCAL.tieP_filter_level = 0).

1.0.6 (2020-10-27)

• Updated minimal version of py_tools_ds (fixes issue #41 (Sporadic AssertionErrors in case the matching window crosses the image edge)).
• Revised requirements and environment_arosics.yml.
• Replaced deprecated 'source activate' by 'conda activate'. Updated installation instructions.
• Unittests are now also executable on Windows.

1.0.5 (2020-10-21)

• Added shebang to bin files to ensure they Python executable (fixes issue #16).

1.0.4 (2020-10-21)

• Fix for not passing the quiet mode parameter to Tie_Point_Refiner class when using CORE_LOCAL.

1.0.3 (2020-10-19)

• Fixed linting.
• Fixed an unhelpful error message in case no coregistration point can be placed within an image area usable for coregistration due to the provided bad data mask.
• Fixed some wrong type hints.
• Added COREG_LOCAL.calculate_spatial_shifts() allowing to explicitly compute the shifts instead of implicitly running the getter properties. This improves API clarity and facilitates debugging.
• Added sphinx-autodoc-typehints to doc requirements.

1.0.2 (2020-10-12)

• Fixed linting.
• Fixed DeprecationWarning within CORE_LOCAL.view_CoRegPoints().
• Caught matplotlib warnings within tests.
• Added test/doc/lint/dev requirements as optional installation procedures to setup.py.

1.0.1 (2020-10-12)

• Excluded tests from being installed via 'pip install'. Set development status to 'stable'.
• Use SPDX license identifier and set all files to GLP3+ to be consistent with license headers in the source files.
• Improved installation instructions. Added conda-forge badge.

1.0.0 (2020-10-06)

• Revised COREG_LOCAL.view_CoRegPoints() and replaced basemap with cartopy.
• Revised environment_arosics.yml.
• Fixed issue #36.
• Closed issue #26.

0.9.26 (2020-10-02)

• Fixed broken pip installation of basemap.

0.9.25 (2020-09-30)

• Replaced requirement 'basemap' in setup.py and requirements.txt by ssh link to fix exception during 'pip install'.
• Updated the installation instructions as AROSICS is now on conda-forge.

0.9.24 (2020-09-28)

• The 'pykrige', 'pyfftw' and 'basemap' requirements are no longer optional since they are easily installable from conda-forge now.
• Updated requirements and installation instructions.

0.9.23 (2020-09-25)

• Moved all matplotlib imports from module level to function/class level to avoid static TLS ImportError.

0.9.22 (2020-10-02)

• Moved all skimage imports from module level to function/class level to avoid static TLS ImportError.

0.9.21 (2020-10-15)

• Replaced deprecated HTTP links.
• Fixed typo.
• arosics_ci.docker now inherits from ci_base_centos:0.1. Conda update now uses conda-forge channel.
• Don't inherit from gms_base.
• Re-added conda-forge::libgdal.
• Fixed syntax.
• Added pip to requirements.
• Updated CI setup files and .gitlab-ci.yml.
• Added some information about supported projections to the docs.

0.9.20 (2020-08-26)

• AROSICS now uses pyproj>2.2 under the hood for projection transformations.
• Added minimal version of pyproj.

0.9.19 (2020-08-21)

• Added tolerances to the window position validation to avoid float precision issues.
• Updated minimal version of geoarray.
• Fixed a bug which causes COREG.equalize_pixGrids() to run although the pixel grids of reference and target image are equal.
• Fixed ResourceWarning in COREG.show_matchWin() as well as in COREG.calculate_spatial_shifts().
• Fixed exception in COREG.view_CoRegPoints_folium() in case of a recent version of folium.

0.9.18 (2020-08-18)

• Added geoarray update to CI config.
• Fixed DeprecationWarning coming from holoviews.

0.9.17 (2020-05-19)

• Updated minimal version of py_tools_ds (fixes PyProj DeprecationWarning).

0.9.16 (2020-05-19)

• Fixed create_github_release CI job.

0.9.15 (2020-04-09

• Added create_release_from_gitlab_ci.sh and updated create_github_release CI job.

0.9.14 (2020-04-08)

• Fixed create_github_release CI job.

0.9.13 (2020-04-08)

• Fixed invalid yaml syntax.
• Added CI job 'create_github_release'.

0.9.12 (2020-04-08)

• Revised .gitlab-ci.yml. Updated installation instructions (Python is now installed from conda-forge channel - fixes issue #35).
• Updated test_arosics_install CI job.
• Added funding information.

0.9.11 (2020-04-07)

• Fixed typo.

0.9.10 (2020-04-07)

• Added Zenodo badge and citation hint to README.rst.

0.9.9 (2020-04-07)

• Fixed line break.

0.9.8 (2020-04-07)

• Updated .zenodo.json.
• Added CITATION file.
• Updated copyright.
• Updated installation instructions and environment_arosics.yml.
• Added .zenodo.json file.
• Removed version pinnings from requirements_dev.txt.

0.9.7 (2020-04-06)

• Fix incompatibity with shapely 1.7.0 (implies an update of the minimal version of py_tools_ds). Remove shapely version pinning.

0.9.6 (2020-02-11)

• Pinned shapely to versions older or equal than 1.6.4.

0.9.5 (2020-01-08)

• Updated minimal version of py_tools_ds.
• Updated conda environment file.

0.9.4 (2020-01-08)

• Removed pyresample dependency (not needed anymore).
• Fixed broken badge.
• Merge branch 'bugfix/adapt_to_geopandas_changes' into 'master'

0.9.3 (2019-11-27)

• Fixed issue #31 (ValueError: Unknown column geometry).
• Fixed issue #32 (NotImplementedError: fillna currently only supports filling with a scalar geometry).
• Added pandas to requirements.
• Changed badge target.
• Added downloads badge.

0.9.2 (2019-11-27)

• Removed deprecated PyPI upload code from .gitlab-ci.yml. Replaced relative links in README.rst by absolute ones.

0.9.1 (2019-07-26)

• Added title to README.rst. Try to disable title.
• Added pyresample to conda dependencies (might fix test_arosics_install). Replaced deprecated PyPI upload by twine.
• Changed description file in setup.cfg.
• Added missing cli_reference.rst content.
• Added missing cli_reference.rst.

0.9.0 (2019-11-27)

• Removed the deprecated README.md.
• Replaced HTML table by image.
• Added links and fixed typo.
• Revised about.rst, added Gitter badge.
• Revised README.rst.
• Resized images physically.
• Updated README.rst.
• Revised CONTRIBUTING.rst
• Improved code block style.
• Changed toc maxdepth.
• Added usage instructions.
• Updated api_cli_reference.rst and sub-sections.
• Updated usage.rst and sub-sections.
• Moved CLI reference to API reference subsection.
• Fix in installation.rst.
• Revised README.rst.
• Updated usage.rst.
• Updated installation.rst.
• Enabled TODOs to be rendered.
• Revised docstring style.
• Added caption.
• Added subsections to usage.rst.
• First empty version of usage.rst.
• Revised DESHIFTER.__doc__.
• Revised about.rst.
• Revised DESHIFTER.__doc__. Added sphinx type hints.
• Added about.rst. Updated index.rst and re-ordered HISTORY.rst.
• Test revision.
• Revised 'make docs' rule.
• Revised DESHIFTER.__doc__.
• Changed sphinx theme. Documentation now also includes __init__() methods.
• Increased sphinx documentation content width.

0.8.19 (2019-07-22)

• Removed hardcoded test.
• Added license texts. Added funding note.

0.8.18 (2019-06-17)

• Fixed issue #30 (Exception in case of non-quadratic pixels of the input images).

0.8.17 (2019-05-10)

• Updated minimal version of geoarray.

0.8.16 (2019-02-27)

• Updated minimal version of py_tools_ds (fixes issue #27).

0.8.15 (2019-02-19)

• Fixed PyPi upload error (invalid value for classifiers within setup.py).).
• Updated minimal version of py_tools_ds.
• Added tests for ETRS/LAEA projection compatibility.
• Fixed some style issues.
• Added gitter badge. Added classifiers to setup.py.
• Added keywords.
• Code style improvements.

0.8.14 (2018-12-05)

• Moved cmocean to conda requirements due to setup issue under Python 2.7.
• Removed '-y -q' from conda install commands contained in installation instructions in README files.
• Replaced 'importlib.util.find_spec' with 'pkgutil.find_loader' to ensure Python 2.7 compatibility.
• Updated minimal version of geoarray.
• Added Python 3.7 to classifiers in setup.py.

0.8.13 (2018-12-04)

• Test fix.
• Fixed issue # 17 (Coregistration sometimes fails in case of floating point coordinates of the input images.)
• Fixed an issue causing SSIM computation to fail (due to float coordinates).

0.8.12 (2018-11-30)

• Fixed issue #23 ('TypeError in case COREG or COREG_LOCAL is called with an in-memory reference or target image and path_out is set to 'auto'.').

0.8.11 (2018-11-28)

• Fixed exception in case Tie_Point_Grid.to_PointShapefile() is called with skip_nodata=False.

0.8.9 (2018-11-27)

• Fixed figure of tie point grid broken due to matplotlib 3.0.0/basemap 1.2 incompatibility.

0.8.8 (2018-10-22)

• Fixed issue #21(pandas value error during dataframe merging).
• Fixed linting.
• Added folium and geojson to requirements. Fixed view_CoRegPoints_folium().
• CI setup now updates ci_env environment installed via docker_pyenvs instead of creating an independent environment.
• Fixed duplicate of pycodestyle in environment file.
• Fix.
• CI Python environment is not separate from the base env.
• Fixed mixed channels for gdal and libgdal causing libkea issue during CI.

0.8.7 (2018-08-10)

• Fix for incompatible version of pycodestyle during CI.
• Updated minimally required geoarray version.
• Added version.py.
• Bugfix.
• Implemented changes from the current branch of geoarray (feature/improve_metadata_handling).
• Updated docker runner build script.

0.8.6 (2018-07-20)

• Bugfix for issue #13 (ValueError related to pandas.merge).

0.8.5 (2018-04-25)

• Fixed documentation on output data format.
• Updated test_COREG.py.

0.8.4 (2018-03-08)

• Removed TestBandnames.
• Revised previous commit.

0.8.3 (2018-03-07)

• Fixed ValueError as reported in https://git.gfz-potsdam.de/EnMAP/sicor/issues/22.

0.8.2 (2018-01-23)

• Revised arosics_cli.py.
• Fixed issue #14.
• Added importlib (must be revised).

0.8.1 (2017-11-21)

• Added test for COREG_LOCAL.view_CoRegPoints_folium().

0.8.0 (2017-11-21)

• Added shift vector plots (COREG_LOCAL.view_CoRegPoints(shapes2plot='vectors') + tests.

0.7.0 (2017-11-20)

• Adapted docker installer to new external base image.
• Updated arosics_environment.yml.
• Updated docker installer workflow.
• Added environment_arosics.yml
• Updated minimal version py_tools_ds.
• Added geopandas to CI installer test.
• Updated minimum version of py_tools_ds in docker container setup.
• Added Test_Tie_Point_Grid.tearDown().
• Removed old functions for deshifting within COREG class:
• Moved several functions to py_tools_ds.
• Removed deprecated functions.
• Removed io and utilities modules.

0.6.8 (2017-11-16)

• Fixed Tie_Point_Grid.to_PointShapefile().
• Added tests for some functions within Tie_Point_Grid.
• Updated README files.
• Updated README files and installation.rst.
• Moved package geopandas to conda dependencies.

0.6.7 (2017-11-15)

• Fixed exceptions within Tie_Point_Grid.plot_shift_distribution(), calc_overall_mssim(), calc_rmse. Added test_tie_point_grid.py.

0.6.6 (2017-10-26)

• Updated minimal version of geoarray.
• Added requirements_pip.txt.

0.6.5 (2017-11-18)

• Bugfix for not checking validity of GeoArray_CoReg.footprint_poly.

0.6.4 (2017-10-12)

• Updated minimal versions of geoarray and py_tools_ds.

0.6.3 (2017-10-12)

• Excluded some funcs from coverage.
• test_arosics_install is now executed within latest Python.
• Updated docker setup.

0.6.2 (2017-10-11)

• Fixed pages.
• Updated .gitlab-ci.yml to make pages work again.

0.6.1 (2017-10-10)

• Simplified dependency checks.

0.6.0 (2017-10-10)

• Updated docker setup.
• Updated minimal versions of dependencies.
• Disabled coverage for deprecated funcs. Too small SCPS is now catched.
• Tie_Point_Grid.get_CoRegPoints_table(): local CS not rejectd anymore.
• Fixed test_shift_calculation_with_image_coords_only(). Fixed flake8 issues.
• SSIM now fails with a warning instead of raising an exception and forcing the whole coreg to fail.
• test_COREG.test_shift_calculation_with_image_coords_only: changed input gt.
• Revised COREG.show_matchWin().
• COREG.calculate_spatial_shifts(): removed deprecated function.
• Added test_shift_calculation_with_image_coords_only()

0.5.1 (2017-10-06)

• First attempt to implement autoclip to polygon to fix unequal matching window sizes in case of float coordinates.
• Updated test_COREG_LOCAL.
• Tie_Point_Grid: added type hints.
• DeShifter: cleaned up.
• Cleaned requirements.txt.

0.5.0 (2017-09-19)

New features:

• Added two test cases for local co-registration and the respective test data.
• Added test cases for global co-registration
• Added test of output writer and tie point grid visualization.
• Added nosetests. Resolved some setup requirements by conda during test_arosics_install.
• PEP8 code style now checked with automatic style checkers

Fixes and improvements:

• Coverage now also working in multiprocessing.
• Replaced test data of test case INTER1 with LZW compressed GeoTIFFs to speed up testing.
• Revised docker container builder.
• Bugfix for unexpected FFTW return value that caused the matching to fail
• Added some docstrings.
• Refactored command line interface 'arosics.py' to 'arosics_cli.py' to fix import issues.
• Added usage documentation for command line interface.
• Removed pykrige from automatically installed libraries during setup. It is now optional (Fixes issue #12)
• Bugfix in connection with optional library pyfftw.
• Revised installation guidelines within README.rst, README.md and installation.rst. Added link for nosetests HTML report.
• Fixed exception in case no arguments are provided to command line interface.
• Revised error handling and added additional check for projection.
• GDAL_DATA environment variable is now handled within py_tools_ds. Updated minimal version of py_tools_ds in setup.py.
• Fixed pickling error when running COREG_LOCAL in multiprocessing under a Windows environment.
• Replaced all occurrences of "quality grid" with "tie point grid".

0.4.0 (2017-07-07)

New features:

• added a logo
• added auto-deploy to PyPI
• added test cases for local co-registration

Fixes and improvements:

• fixed warping issues in case only very few tie points could be identified

0.2.1 (2017-07-03)

• First release on PyPI.

0.1.0 (2017-06-15)

• Package creation.