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how to select peptides originating from an protein in ensemble mean predicted values classI results #1

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indapa opened this issue Jul 21, 2020 · 0 comments
Open

how to select peptides originating from an protein in ensemble mean predicted values classI results #1

indapa opened this issue Jul 21, 2020 · 0 comments

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@indapa
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indapa commented Jul 21, 2020

Does the file

mean2_mhc1_pred_affinity_pivot.pkl

list the mean predicted binding affinity from MHCflurry and NetMHCpan? Are the values listed in the dataframe represent the logistic transformed values? Is there a way to select peptides originated from a particular SARS-Cov-2 protein / ORF using the dataframe represented in the above reference .pkl file?
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@indapa