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NAMESPACE
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NAMESPACE
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import(Matrix)
importFrom(LowRankQP, LowRankQP)
importFrom(stats, coef, coefficients, fitted, fitted.values, vcov, logLik)
importFrom(graphics, plot)
importFrom(numDeriv, grad, hessian)
importFrom(qvalue, qvalue)
importFrom(scatterplot3d, scatterplot3d)
importFrom(Iso, pava)
#importFrom(rgl, plot3d, persp3d)
#importExcept(Matrix, summary, update)
importFrom(kernlab, ipop, primal)
importFrom(quadprog, solve.QP)
importFrom(limSolve, lsei)
## added using K. Hornik's code since 3.3.0
importFrom("graphics", "abline", "axis", "box", "curve", "hist", "lines", "mtext", "par", "persp", "points", "rug", "title")
importFrom("grDevices", "nclass.FD", "nclass.Sturges", "nclass.scott", "trans3d", "dev.new")
importFrom("methods", "as")
importFrom("stats", "aggregate", "approx", "approxfun", "dchisq", "df", "dnorm", "dt", "integrate", "make.link", "nlminb", "optim", "optimize", "pnorm", "pt", "qchisq", "qnorm", "qt", "quantile", "rnorm", "sd", "start", "var", "constrOptim", "nobs")
export(
agjack.pi0,
CBUM,
clean.cdf,
combn2R,
combn2RRepl,
combnBt2RAllDifc,
combnBt2Rc,
combnBtRc,
combnRRepl,
cond.cdf,
convest,
# dFsnc.mix,
discTMix,
dncp,
dt.int2,
dt.lap,
dt.sad,
dtn.mix,
extrp.pi0,
extrp.pi0.both,
extrp.pi0.both.gam2,
extrp.pi0.gam2,
extrp.pi0.only,
extrp.pi0.rate,
extrp.pi0.rate.gam2,
extrp.pi0.slope,
extrp.pi0.slope.gam2,
fdr,
fold,
geomean,
gjack,
grid.search,
harmean,
histf1,
lastbin,
lfdr,
load.cdf,
#loadOrInstall,
marginal.dt,
marginal.dt.nparncpt,
marginal.dt.parncpt,
marginal.dt.sparncpt,
matrix.t.test,
momeff.nonzeromean,
momeff.zeromean,
mTruncNorm,
mTruncNorm.int2,
NBsplines,
# nparncpF,
# nparncpF.sqp,
nparncpp,
nparncpp.iter,
nparncpt,
nparncpt.sqp,
# parncpF,
# parncpF.lbfgsb.central,
# parncpF.lbfgsb.noncentral,
# parncpF.unconstrained.central,
# parncpF.unconstrained.noncentral,
parncpt,
parncpt.bfgs.0mean,
parncpt.bfgs.non0mean,
parncpt.momeff,
parncpt2,
pavaf1,
pdf.dist,
ppee,
pt.sad,
reflect,
save.cdf,
sim.dat,
# sparncpF,
# sparncpF.nparncpF,
# sparncpF.numeric,
# sparncpF.parncpF,
sparncpt,
sparncpt.nparncpt,
sparncpt.numeric,
sparncpt.parncpt,
subex,
subt,
varB,
znormix
)
S3method(coef, ncpest)
#S3method(dncp, nparncpF)
S3method(dncp, nparncpp)
S3method(dncp, nparncpt)
#S3method(dncp, parncpF)
S3method(dncp, parncpt)
S3method(dncp, parncpt2)
#S3method(dncp, sparncpF)
S3method(dncp, sparncpt)
S3method(fitted, discTMix)
#S3method(fitted, nparncpF)
S3method(fitted, nparncpp)
S3method(fitted, nparncpt)
#S3method(fitted, parncpF)
S3method(fitted, parncpt)
S3method(fitted, parncpt2)
#S3method(fitted, sparncpF)
S3method(fitted, sparncpt)
S3method(lfdr, CBUM)
S3method(lfdr, convest)
S3method(lfdr, default)
S3method(lfdr, discTMix)
S3method(lfdr, nparncpp)
S3method(lfdr, nparncpt)
#S3method(lfdr, nparncpF)
S3method(lfdr, parncpt)
#S3method(lfdr, parncpF)
#S3method(lfdr, parncpt2)
S3method(lfdr, sparncpt)
#S3method(lfdr, sparncpF)
S3method(lfdr, znormix)
S3method(logLik, ncpest)
S3method(plot, extrpi0)
#S3method(plot, nparncpF)
S3method(plot, nparncpt)
#S3method(plot, parncpF)
S3method(plot, parncpt)
S3method(plot, parncpt2)
#S3method(plot, sparncpF)
S3method(plot, sparncpt)
S3method(plot, subex)
S3method(plot, subt)
S3method(print, extrpi0)
#S3method(print, nparncpF)
S3method(print, nparncpt)
#S3method(print, parncpF)
S3method(print, parncpt)
S3method(print, parncpt2)
#S3method(print, sparncpF)
S3method(print, sparncpt)
S3method(print, subex)
S3method(print, subt)
S3method(summary, extrpi0)
#S3method(summary, nparncpF)
S3method(summary, nparncpt)
#S3method(summary, parncpF)
S3method(summary, parncpt)
S3method(summary, parncpt2)
#S3method(summary, sparncpF)
S3method(summary, sparncpt)
S3method(summary, subex)
S3method(summary, subt)
S3method(vcov, ncpest)
S3method(marginal.dt, nparncpt)
S3method(marginal.dt, parncpt)
S3method(marginal.dt, sparncpt)
#S3method(sparncpF, nparncpF)
#S3method(sparncpF, numeric)
#S3method(sparncpF, parncpF)
S3method(sparncpt, nparncpt)
S3method(sparncpt, numeric)
S3method(sparncpt, parncpt)
useDynLib(pi0, .registration =TRUE, .fixes="C_")