This repository contains all of the tools used during the acquisition and postprocessing of line scanning data at the Spinoza Centre for Neuroimaging in Amsterdam. The main goal of the package is to create the most accurate segmentations (both volumetric and surface) by combining various software packages such as Nighres, fMRIprep, FreeSurfer, CAT12, and SPM, and analyze line-scanning data (mainly including GLMs and deconvolutions with Nideconv). Also has the capability to read in any type of input file (npy, gii, nii, nii.gz, np.ndarray), and return a dataframe index on subject, run, and voxels so it's compatible with Nideconv.
installation usage
examples/acompcor examples/eyetracker examples/genericglm examples/lazyplot examples/nideconv examples/prfmodelfitter examples/prf_verify
bash classes/index