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glycoworkshop-20180308.ttl
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glycoworkshop-20180308.ttl
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX dc: <http://purl.org/dc/elements/1.1/>
PREFIX dcterms: <http://purl.org/dc/terms/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX void: <http://rdfs.org/ns/void#>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX glycan: <http://purl.jp/bio/12/glyco/glycan#>
PREFIX up: <http://purl.uniprot.org/core/>
PREFIX faldo: <http://biohackathon.org/resource/faldo#>
PREFIX UO: <http://purl.obolibrary.org/obo/>
PREFIX gs: <http://glyconavi.org/glycosample/>
PREFIX ga: <http://glyconavi.org/glyabun/>
PREFIX gb: <http://glyconavi.org/glycobio/>
PREFIX sio: <http://semanticscience.org/resource/>
PREFIX chebi: <http://bio2rdf.org/chebi:>
PREFIX exterms: <http://www.example.org/terms/>
PREFIX pav: <http://purl.org/pav/>
PREFIX dcat: <http://www.w3.org/ns/dcat#>
PREFIX wurcskey: <http://purl.jp/bio/12/glyco/wurcs/WURCSKey=2.0/MD5/>
gb:R1 rdfs:label "oLH protein_complex" .
gb:R1 rdf:type ga:BioResource .
gb:R1 rdf:type sio:SIO_010497 . # protein complex
gb:R1 dcterms:identifier "R1" .
gb:R1 sio:has-component-part gb:R1RP1 .
gb:R1RP1 dcterms:identifier "R1RP1" .
gb:R1RP1 rdf:type glycan:ReferencedProtein .
#gb:R1RP1 dcterms:refrence <http://rdf.ncbi.nlm.nih.gov/pubmed/2209620> .
gb:R1RP1 glycan:published_in <http://rdf.ncbi.nlm.nih.gov/pubmed/2209620> .
<http://rdf.ncbi.nlm.nih.gov/pubmed/2209620> rdf:type glycan:Citation .
<http://rdf.ncbi.nlm.nih.gov/pubmed/2209620> rdfs:seeAlso <http://identifiers.org/pmid/2209620> .
<http://rdf.ncbi.nlm.nih.gov/pubmed/2209620> dcterms:identifier "2209620" .
#gb:R1RP1 sio:hasSynonym "黄体形成ホルモン alpha chain" .
#gb:R1RP1 sio:hasSynonym "ovine lutropin alpha chain" .
#gb:R1RP1 ga:abbreviation "oLH alpha" .
gb:R1RP1 rdfs:label "oLH alpha" .
<http://purl.uniprot.org/uniprot/P01218> ga:protein_subunit "oLHα" .
<http://purl.uniprot.org/uniprot/P01218> rdfs:label "ovine lutropin alpha chain protein" .
<http://purl.uniprot.org/uniprot/P01218> ga:aa_sequence "MDYYRKYAAAILAILSLFLQILHSFPDGEFTMQGCPECKLKENKYFSKPDAPIYQCMGCCFSRAYPTPARSKKTMLVPKNITSEATCCVAKAFTKATVMGNVRVENHTECHCSTCYYHKS" .
<http://purl.uniprot.org/uniprot/P01218> ga:aa_length "120" .
gb:R1RP1 glycan:has_protein <http://purl.uniprot.org/uniprot/P01218> .
<http://purl.uniprot.org/uniprot/P01218> dcterms:identifier "P01218" .
<http://purl.uniprot.org/uniprot/P01218> rdf:type glycan:Glycoprotein .
<http://purl.uniprot.org/uniprot/P01218> dcterms:identifier "P01218" .
# Glyconnect
<http://purl.uniprot.org/uniprot/P01218> rdfs:label "ovine lutropin alpha chain protein" .
# Glyconnect
<http://purl.uniprot.org/uniprot/P01218> foaf:primaryTopic <http://identifiers.org/uniprot/P01218> .
# Glyconnect
<http://purl.uniprot.org/uniprot/P01218> rdfs:seeAlso <http://identifiers.org/uniprot/P01218> .
#<http://purl.uniprot.org/uniprot/P01218> ga:has_n-linked_site "80" .
#<http://purl.uniprot.org/uniprot/P01218> ga:has_n-linked_site "106" .
gb:R1RP1 glycan:has_glycoform gb:R1RP1GF1 .
gb:R1RP1RS1 glycan:has_glycoform gb:R1RP1GF1 .
gb:R1RP1GF1 rdf:type glycan:Glycoform .
gb:R1RP1GF1 dcterms:identifier "R1RP1GF1" .
gb:R1RP1 glycan:has_attached_glycan gb:R1RP1RS1 .
gb:R1RP1RS1 rdf:type glycan:ReferencedSaccharide .
# 2018-03-09
gb:R1RP1GF1 glycan:has_saccharide gb:R1RP1RS1 .
gb:R1RP1RS1 glycan:has_glycan <htps://glytoucan.org/Structure/Glycans/G65117HG> .
<htps://glytoucan.org/Structure/Glycans/G65117HG> rdf:type glycan:Saccharide .
<htps://glytoucan.org/Structure/Glycans/G65117HG> rdfs:seeAlso <http://identifiers.org/glytoucan/G65117HG> .
<htps://glytoucan.org/Structure/Glycans/G65117HG> dcterms:identifier "G65117HG" .
gb:R1RP1RS1 rdf:type glycan:ReferencedSaccharide .
gb:R1RP1RS1 exterms:percentage gb:R1RP1RS1_percentage .
gb:R1RP1RS1_percentage rdf:type glycan:RelativeAbundance .
gb:R1RP1RS1_percentage rdfs:comment "Relative abundance of glycan" .
gb:R1RP1RS1_percentage sio:has-value "16" .
gb:R1RP1RS1_percentage sio:has-unit UO:0000193 .
gb:R1RP1RS1_percentage rdf:type sio:SIO_001018 .
gb:R1RP1GF1 glycan:is_glycosylated_at gb:R1RP1Loc1 .
gb:R1RP1 glycan:is_glycosylated_at gb:R1RP1Loc1 .
gb:R1RP1Loc1 rdf:type glycan:Glycosylation_site .
gb:R1RP1Loc1 faldo:location gb:R1RP1Loc1pos .
gb:R1RP1Loc1 rdf:type faldo:ExactPosition .
gb:R1RP1Loc1pos faldo:position "80"^^xsd:int .
# author position
gb:R1RP1Loc1 faldo:location gb:R1RP1Loc1pos-auth .
gb:R1RP1Loc1pos-auth rdf:type ga:AuthorPosition .
gb:R1RP1Loc1pos-auth faldo:position "56"^^xsd:int .
gb:R1RP1Loc1pos-auth rdfs:label "author position is 56" .