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Biomarkers dataset issues #135

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kmartinez834 opened this issue Mar 13, 2023 · 2 comments
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Biomarkers dataset issues #135

kmartinez834 opened this issue Mar 13, 2023 · 2 comments
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@kmartinez834
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backend_dataset
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2.2

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@kmartinez834
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kmartinez834 commented Mar 13, 2023 •
edited by ReneRanzinger
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Continued from #12 and #13 , the following issues to be addressed in next release:

  • The "anatomical_entity" field should match the "uberon_id" field. Use the misc/sample_mapping.csv file for Uberon mapping.
    Currently in unreviewed/glycan_biomarkers.csv:
"anatomical_entity","uberon_id"
"DOID:1612 / Breast Cancer","0000178"

Should be:

"anatomical_entity","uberon_id"
"blood","UBERON:0000178"
  • Duplicates in human_protein_biomarkers.csv
  • Make field names consistent with other datasets

Blocker for:
@kmartinez834 kmartinez834 added moved to next version Issue for the next release cycle backend_dataset labels Mar 13, 2023
@kmartinez834 kmartinez834 added this to the 2.1 milestone Mar 13, 2023
@kmartinez834 kmartinez834 self-assigned this Mar 13, 2023
@kmartinez834 kmartinez834 mentioned this issue Mar 13, 2023
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@kmartinez834 kmartinez834 changed the title glycan_biomarkers.csv issues Biomarkers dataset issues Mar 13, 2023
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@jeet-vora

@kmartinez834 kmartinez834 mentioned this issue Mar 13, 2023
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@ReneRanzinger ReneRanzinger modified the milestones: 2.1, 2.2 May 31, 2023
This was referenced Jul 4, 2023
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Issues included in dataset processing ticket #604

@ReneRanzinger ReneRanzinger removed the moved to next version Issue for the next release cycle label Aug 10, 2023
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