/
reader.go
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/
reader.go
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// Copyright ©2020 The go-hep Authors. All rights reserved.
// Use of this source code is governed by a BSD-style
// license that can be found in the LICENSE file.
package rtree
import (
"fmt"
"io"
"go-hep.org/x/hep/groot/rtree/rfunc"
)
// Reader reads data from a Tree.
type Reader struct {
r reader
beg int64
end int64
nrab int // number of read-ahead baskets
tree Tree
rvars []ReadVar
evals []rfunc.Formula
dirty bool // whether we need to re-create scanner (if formula needed new branches)
}
// ReadOption configures how a ROOT tree should be traversed.
type ReadOption func(r *Reader) error
// WithRange specifies the half-open interval [beg, end) of entries
// a Tree reader will read through.
func WithRange(beg, end int64) ReadOption {
return func(r *Reader) error {
r.beg = beg
r.end = end
return nil
}
}
// WithPrefetchBaskets specifies the number of baskets to read-ahead, per branch.
// The default is 2.
// The number of prefetch baskets is cap'ed by the number of baskets, per branch.
func WithPrefetchBaskets(n int) ReadOption {
return func(r *Reader) error {
r.nrab = n
return nil
}
}
// NewReader creates a new Tree Reader from the provided ROOT Tree and
// the set of read-variables into which data will be read.
func NewReader(t Tree, rvars []ReadVar, opts ...ReadOption) (*Reader, error) {
r := Reader{tree: t}
err := r.setup(t, opts)
if err != nil {
return nil, err
}
rvars, err = sanitizeRVars(t, rvars)
if err != nil {
return nil, fmt.Errorf("rtree: could not create reader: %w", err)
}
r.r = newReader(t, rvars, r.nrab, r.beg, r.end)
r.rvars = r.r.rvars()
return &r, nil
}
func (r *Reader) setup(t Tree, opts []ReadOption) error {
r.beg = 0
r.end = -1
r.nrab = 2
for i, opt := range opts {
err := opt(r)
if err != nil {
return fmt.Errorf(
"rtree: could not set reader option %d: %w",
i, err,
)
}
}
if r.end < 0 {
r.end = t.Entries()
}
if r.beg < 0 {
return fmt.Errorf("rtree: invalid event reader range [%d, %d) (start=%d < 0)",
r.beg, r.end, r.beg,
)
}
if r.beg > r.end {
return fmt.Errorf("rtree: invalid event reader range [%d, %d) (start=%d > end=%d)",
r.beg, r.end, r.beg, r.end,
)
}
if r.beg > t.Entries() {
return fmt.Errorf("rtree: invalid event reader range [%d, %d) (start=%d > tree-entries=%d)",
r.beg, r.end, r.beg, t.Entries(),
)
}
if r.end > t.Entries() {
return fmt.Errorf("rtree: invalid event reader range [%d, %d) (end=%d > tree-entries=%d)",
r.beg, r.end, r.end, t.Entries(),
)
}
return nil
}
// Close closes the Reader.
func (r *Reader) Close() error {
if r.r == nil {
return nil
}
err := r.r.Close()
r.r = nil
r.evals = nil
return err
}
// RCtx provides an entry-wise local context to the tree Reader.
type RCtx struct {
Entry int64 // Current tree entry.
}
// Read will read data from the underlying tree over the whole specified range.
// Read calls the provided user function f for each entry successfully read.
func (r *Reader) Read(f func(ctx RCtx) error) error {
if r.dirty {
r.dirty = false
_ = r.r.Close()
r.r = newReader(r.tree, r.rvars, r.nrab, r.beg, r.end)
}
r.r.reset()
const eoff = 0 // entry offset
return r.r.run(eoff, r.beg, r.end, f)
}
// Reset resets the current Reader with the provided options.
func (r *Reader) Reset(opts ...ReadOption) error {
if r.r != nil {
err := r.r.Close()
if err != nil {
return fmt.Errorf("rtree: could not reset internal reader: %w", err)
}
}
err := r.setup(r.tree, opts)
if err != nil {
return fmt.Errorf("rtree: could not reset reader options: %w", err)
}
r.r = newReader(r.tree, r.rvars, r.nrab, r.beg, r.end)
r.rvars = r.r.rvars()
return nil
}
// FormulaFunc creates a new formula based on the provided function and
// the list of branches as inputs.
func (r *Reader) FormulaFunc(branches []string, fct interface{}) (rfunc.Formula, error) {
f, err := rfunc.NewGenericFormula(branches, fct)
if err != nil {
return nil, fmt.Errorf("rtree: could not create formula: %w", err)
}
return r.Formula(f)
}
// Formula creates a new formula based on the provided user provided formula.
// Formula binds the provided function with the requested list of leaves.
func (r *Reader) Formula(f rfunc.Formula) (rfunc.Formula, error) {
n := len(r.rvars)
f, err := newFormula(r, f)
if err != nil {
return nil, fmt.Errorf("rtree: could not create formula: %w", err)
}
r.evals = append(r.evals, f)
if n != len(r.rvars) {
// formula needed to auto-load new branches.
// mark reader as dirty to re-create its internal scanner
// before the event-loop.
r.dirty = true
}
return f, nil
}
func sanitizeRVars(t Tree, rvars []ReadVar) ([]ReadVar, error) {
for i := range rvars {
rvar := &rvars[i]
if rvar.Leaf == "" {
rvar.Leaf = rvar.Name
}
if rvar.count != "" {
continue
}
br := t.Branch(rvar.Name)
if br == nil {
return nil, fmt.Errorf("rtree: tree %q has no branch named %q", t.Name(), rvar.Name)
}
leaf := br.Leaf(rvar.Leaf)
if leaf == nil {
continue
}
lfc := leaf.LeafCount()
if lfc != nil {
rvar.count = lfc.Name()
}
}
return rvars, nil
}
type reader interface {
Close() error
rvars() []ReadVar
run(off, beg, end int64, f func(RCtx) error) error
start() error
stop()
reset()
}
// rtree reads a tree.
type rtree struct {
tree *ttree
rvs []ReadVar
brs []rbranch
lvs []rleaf
}
var (
_ reader = (*rtree)(nil)
)
func (r *rtree) rvars() []ReadVar { return r.rvs }
func newReader(t Tree, rvars []ReadVar, n int, beg, end int64) reader {
rvars, err := sanitizeRVars(t, rvars)
if err != nil {
panic(err)
}
switch t := t.(type) {
case *ttree:
return newRTree(t, rvars, n, beg, end)
case *tntuple:
return newRTree(&t.ttree, rvars, n, beg, end)
case *tntupleD:
return newRTree(&t.ttree, rvars, n, beg, end)
case *chain:
return newRChain(t, rvars, n, beg, end)
case *join:
return newRJoin(t, rvars, n, beg, end)
default:
panic(fmt.Errorf("rtree: unknown Tree implementation %T", t))
}
}
func newRTree(t *ttree, rvars []ReadVar, n int, beg, end int64) *rtree {
r := &rtree{
tree: t,
rvs: rvars,
}
usr := make(map[string]struct{}, len(rvars))
for _, rvar := range rvars {
usr[rvar.Name+"."+rvar.Leaf] = struct{}{}
}
var rcounts []ReadVar
for _, rvar := range rvars {
if rvar.count == "" {
continue
}
leaf := t.Branch(rvar.Name).Leaf(rvar.Leaf).LeafCount()
name := leaf.Branch().Name() + "." + leaf.Name()
if _, ok := usr[name]; !ok {
var ptr interface{}
switch leaf := leaf.(type) {
case *LeafB:
ptr = new(int8)
case *LeafS:
ptr = new(int16)
case *LeafI:
ptr = new(int32)
case *LeafL:
ptr = new(int64)
default:
panic(fmt.Errorf("unknown Leaf count type %T", leaf))
}
rcounts = append(rcounts, ReadVar{
Name: leaf.Branch().Name(),
Leaf: leaf.Name(),
Value: ptr,
leaf: leaf,
})
}
}
r.rvs = append(rcounts, r.rvs...)
r.rvs = bindRVarsTo(t, r.rvs)
r.lvs = make([]rleaf, 0, len(r.rvs))
for i := range r.rvs {
rv := r.rvs[i]
r.lvs = append(r.lvs, rleafFrom(rv.leaf, rv, r))
}
// regroup leaves by holding branch
set := make(map[string]int)
brs := make([][]rleaf, 0, len(r.lvs))
for _, leaf := range r.lvs {
br := leaf.Leaf().Branch().Name()
if _, ok := set[br]; !ok {
set[br] = len(brs)
brs = append(brs, []rleaf{})
}
id := set[br]
brs[id] = append(brs[id], leaf)
}
r.brs = make([]rbranch, len(brs))
for i, leaves := range brs {
branch := leaves[0].Leaf().Branch()
r.brs[i] = newRBranch(branch, n, beg, end, leaves, r)
}
return r
}
func (r *rtree) Close() error {
for i := range r.brs {
rb := &r.brs[i]
rb.rb.close()
}
return nil
}
func (r *rtree) start() error {
for i := range r.brs {
rb := &r.brs[i]
err := rb.start()
if err != nil {
if err == io.EOF {
// empty range.
return nil
}
return err
}
}
return nil
}
func (r *rtree) stop() {
for i := range r.brs {
rb := &r.brs[i]
_ = rb.stop()
}
}
func (r *rtree) reset() {
for i := range r.brs {
rb := &r.brs[i]
rb.reset()
}
}
func (r *rtree) rcountFunc(name string) func() int {
for _, leaf := range r.lvs {
n := leaf.Leaf().Name()
if n != name {
continue
}
switch leaf := leaf.(type) {
case *rleafValI8:
return leaf.ivalue
case *rleafValI16:
return leaf.ivalue
case *rleafValI32:
return leaf.ivalue
case *rleafValI64:
return leaf.ivalue
case *rleafValU8:
return leaf.ivalue
case *rleafValU16:
return leaf.ivalue
case *rleafValU32:
return leaf.ivalue
case *rleafValU64:
return leaf.ivalue
case *rleafElem:
leaf.bindCount()
return leaf.ivalue
default:
panic(fmt.Errorf("rleaf %T not implemented", leaf))
}
}
panic(fmt.Errorf("impossible: no leaf for %s", name))
}
func (r *rtree) rcountLeaf(name string) leafCount {
for _, leaf := range r.lvs {
n := leaf.Leaf().Name()
if n != name {
continue
}
return &rleafCount{
Leaf: leaf.Leaf(),
n: r.rcountFunc(name),
leaf: leaf,
}
}
panic(fmt.Errorf("impossible: no leaf for %s", name))
}
func (r *rtree) run(off, beg, end int64, f func(RCtx) error) error {
var (
err error
rctx RCtx
)
defer r.Close()
err = r.start()
if err != nil {
return err
}
defer r.stop()
for i := beg; i < end; i++ {
err = r.read(i)
if err != nil {
return fmt.Errorf("rtree: could not read entry %d: %w", i, err)
}
rctx.Entry = i + off
err = f(rctx)
if err != nil {
return fmt.Errorf("rtree: could not process entry %d: %w", i, err)
}
}
return err
}
func (r *rtree) read(ievt int64) error {
for i := range r.brs {
rb := &r.brs[i]
err := rb.read(ievt)
if err != nil {
return err
}
}
return nil
}
var (
_ rleafCtx = (*rtree)(nil)
)