Nofound model for Quick start

[xuzaoxu]

I followed "Quick start for DeepConsensus", downloaded test data. However, when I run commend:
gsutil cp gs://brain-genomics-public/research/deepconsensus/models/v0.1/* "${MODEL_DIR}"/
There is no no matches found.

I also wonder what does "checkpoint-50" mean for "python3 -m deepconsensus.scripts.run_deepconsensus". How to get checkpoint file if I want to run my own data?

[xuzaoxu]

I used someone else's computer download ”gsutil cp gs://brain-genomics-public/research/deepconsensus/models/v0.1/*“ successfully. My question is checkpoint-50 applicable to different species data?

[AndrewCarroll]

Hi @xuzaoxu

Our intention is for one DeepConsensus model to work across any species. We have evaluated DeepConsensus on a non-human species (Z. mays) and observed improved HiFi results with downstream assembly methods. The generalization of DeepConsensus across species is something that we will monitor, with the goal of a single, universal model for PacBio HiFi error correction.